Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05038 and H281DRAFT_05039 are separated by 193 nucleotides H281DRAFT_05039 and H281DRAFT_05040 are separated by 108 nucleotides
H281DRAFT_05038: H281DRAFT_05038 - MFS transporter, CP family, cyanate transporter, at 225,959 to 227,191
_05038
H281DRAFT_05039: H281DRAFT_05039 - Acetyltransferase (GNAT) domain-containing protein, at 227,385 to 228,179
_05039
H281DRAFT_05040: H281DRAFT_05040 - hypothetical protein, at 228,288 to 229,133
_05040
Position (kb) 227
228
229 Strain fitness (log2 ratio) -1
0
1
2 at 226.427 kb on - strand, within H281DRAFT_05038 at 226.629 kb on - strand, within H281DRAFT_05038 at 226.655 kb on + strand at 226.960 kb on + strand, within H281DRAFT_05038 at 227.114 kb on - strand at 227.301 kb on + strand at 227.302 kb on - strand at 227.421 kb on + strand at 227.422 kb on - strand at 227.599 kb on - strand, within H281DRAFT_05039 at 227.599 kb on - strand, within H281DRAFT_05039 at 227.599 kb on - strand, within H281DRAFT_05039 at 227.632 kb on - strand, within H281DRAFT_05039 at 227.818 kb on - strand, within H281DRAFT_05039 at 227.842 kb on - strand, within H281DRAFT_05039 at 227.980 kb on - strand, within H281DRAFT_05039 at 227.980 kb on - strand, within H281DRAFT_05039 at 228.224 kb on - strand at 228.235 kb on + strand at 228.235 kb on + strand at 228.267 kb on + strand at 228.267 kb on + strand at 228.317 kb on + strand at 228.419 kb on - strand, within H281DRAFT_05040 at 228.613 kb on - strand, within H281DRAFT_05040 at 228.615 kb on - strand, within H281DRAFT_05040 at 228.615 kb on - strand, within H281DRAFT_05040 at 228.615 kb on - strand, within H281DRAFT_05040 at 228.661 kb on + strand, within H281DRAFT_05040 at 228.669 kb on + strand, within H281DRAFT_05040 at 228.878 kb on + strand, within H281DRAFT_05040 at 228.879 kb on - strand, within H281DRAFT_05040 at 229.106 kb on + strand at 229.177 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 226,427 - H281DRAFT_05038 0.38 -0.3 226,629 - H281DRAFT_05038 0.54 +0.1 226,655 + -0.4 226,960 + H281DRAFT_05038 0.81 +0.2 227,114 - +1.1 227,301 + +0.0 227,302 - +0.6 227,421 + +0.1 227,422 - -0.1 227,599 - H281DRAFT_05039 0.27 +0.5 227,599 - H281DRAFT_05039 0.27 +0.5 227,599 - H281DRAFT_05039 0.27 -0.4 227,632 - H281DRAFT_05039 0.31 +1.4 227,818 - H281DRAFT_05039 0.54 +0.5 227,842 - H281DRAFT_05039 0.57 +0.9 227,980 - H281DRAFT_05039 0.75 +0.6 227,980 - H281DRAFT_05039 0.75 +0.4 228,224 - -0.2 228,235 + +0.4 228,235 + -0.7 228,267 + -0.3 228,267 + -0.3 228,317 + -0.1 228,419 - H281DRAFT_05040 0.15 -0.0 228,613 - H281DRAFT_05040 0.38 +0.3 228,615 - H281DRAFT_05040 0.39 +0.0 228,615 - H281DRAFT_05040 0.39 +0.0 228,615 - H281DRAFT_05040 0.39 +0.3 228,661 + H281DRAFT_05040 0.44 +0.6 228,669 + H281DRAFT_05040 0.45 +0.1 228,878 + H281DRAFT_05040 0.70 -0.1 228,879 - H281DRAFT_05040 0.70 -0.9 229,106 + +1.8 229,177 + -0.4
Or see this region's nucleotide sequence