Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04964 and H281DRAFT_04965 are separated by 17 nucleotides H281DRAFT_04965 and H281DRAFT_04966 are separated by 202 nucleotides H281DRAFT_04966 and H281DRAFT_04967 are separated by 85 nucleotides
H281DRAFT_04964: H281DRAFT_04964 - transcriptional regulator, LysR family, at 148,143 to 149,243
_04964
H281DRAFT_04965: H281DRAFT_04965 - hypothetical protein, at 149,261 to 150,139
_04965
H281DRAFT_04966: H281DRAFT_04966 - putative redox protein, at 150,342 to 150,740
_04966
H281DRAFT_04967: H281DRAFT_04967 - protein of unknown function (DUF1857), at 150,826 to 151,308
_04967
Position (kb) 149
150
151 Strain fitness (log2 ratio) -1
0
1
2 at 148.316 kb on - strand, within H281DRAFT_04964 at 148.329 kb on - strand, within H281DRAFT_04964 at 148.387 kb on + strand, within H281DRAFT_04964 at 148.388 kb on - strand, within H281DRAFT_04964 at 148.416 kb on + strand, within H281DRAFT_04964 at 148.416 kb on + strand, within H281DRAFT_04964 at 148.417 kb on - strand, within H281DRAFT_04964 at 148.428 kb on + strand, within H281DRAFT_04964 at 148.428 kb on + strand, within H281DRAFT_04964 at 148.429 kb on - strand, within H281DRAFT_04964 at 148.486 kb on - strand, within H281DRAFT_04964 at 148.520 kb on - strand, within H281DRAFT_04964 at 148.546 kb on - strand, within H281DRAFT_04964 at 148.641 kb on - strand, within H281DRAFT_04964 at 148.809 kb on + strand, within H281DRAFT_04964 at 148.810 kb on - strand, within H281DRAFT_04964 at 148.930 kb on + strand, within H281DRAFT_04964 at 149.102 kb on - strand, within H281DRAFT_04964 at 149.102 kb on - strand, within H281DRAFT_04964 at 149.204 kb on + strand at 149.204 kb on + strand at 149.205 kb on - strand at 149.229 kb on - strand at 149.234 kb on + strand at 149.235 kb on - strand at 149.292 kb on - strand at 149.292 kb on - strand at 149.292 kb on - strand at 149.292 kb on - strand at 149.408 kb on + strand, within H281DRAFT_04965 at 149.471 kb on + strand, within H281DRAFT_04965 at 149.471 kb on + strand, within H281DRAFT_04965 at 149.471 kb on + strand, within H281DRAFT_04965 at 149.471 kb on + strand, within H281DRAFT_04965 at 149.471 kb on + strand, within H281DRAFT_04965 at 149.471 kb on + strand, within H281DRAFT_04965 at 149.472 kb on - strand at 149.472 kb on - strand, within H281DRAFT_04965 at 149.472 kb on - strand, within H281DRAFT_04965 at 149.575 kb on + strand, within H281DRAFT_04965 at 149.804 kb on + strand, within H281DRAFT_04965 at 149.869 kb on - strand, within H281DRAFT_04965 at 149.869 kb on - strand, within H281DRAFT_04965 at 149.901 kb on - strand, within H281DRAFT_04965 at 149.974 kb on + strand, within H281DRAFT_04965 at 149.975 kb on - strand, within H281DRAFT_04965 at 149.975 kb on - strand, within H281DRAFT_04965 at 150.051 kb on - strand, within H281DRAFT_04965 at 150.174 kb on - strand at 150.174 kb on - strand at 150.263 kb on + strand at 150.263 kb on + strand at 150.264 kb on - strand at 150.385 kb on - strand, within H281DRAFT_04966 at 150.525 kb on + strand, within H281DRAFT_04966 at 150.525 kb on + strand, within H281DRAFT_04966 at 150.526 kb on - strand, within H281DRAFT_04966 at 150.526 kb on - strand, within H281DRAFT_04966 at 150.811 kb on + strand at 150.844 kb on - strand at 150.844 kb on - strand at 150.987 kb on + strand, within H281DRAFT_04967 at 150.988 kb on - strand, within H281DRAFT_04967 at 151.090 kb on + strand, within H281DRAFT_04967 at 151.090 kb on + strand, within H281DRAFT_04967 at 151.090 kb on + strand, within H281DRAFT_04967 at 151.090 kb on + strand, within H281DRAFT_04967 at 151.090 kb on + strand, within H281DRAFT_04967 at 151.091 kb on - strand, within H281DRAFT_04967
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 148,316 - H281DRAFT_04964 0.16 -0.4 148,329 - H281DRAFT_04964 0.17 +0.4 148,387 + H281DRAFT_04964 0.22 -0.3 148,388 - H281DRAFT_04964 0.22 -0.8 148,416 + H281DRAFT_04964 0.25 -0.1 148,416 + H281DRAFT_04964 0.25 -0.1 148,417 - H281DRAFT_04964 0.25 +0.6 148,428 + H281DRAFT_04964 0.26 -0.5 148,428 + H281DRAFT_04964 0.26 -0.4 148,429 - H281DRAFT_04964 0.26 +0.2 148,486 - H281DRAFT_04964 0.31 -0.0 148,520 - H281DRAFT_04964 0.34 -0.4 148,546 - H281DRAFT_04964 0.37 -0.1 148,641 - H281DRAFT_04964 0.45 -0.3 148,809 + H281DRAFT_04964 0.60 -0.2 148,810 - H281DRAFT_04964 0.61 -0.1 148,930 + H281DRAFT_04964 0.71 -0.2 149,102 - H281DRAFT_04964 0.87 +0.1 149,102 - H281DRAFT_04964 0.87 +0.7 149,204 + -0.3 149,204 + -0.4 149,205 - +0.3 149,229 - +1.3 149,234 + +0.9 149,235 - -0.1 149,292 - +0.2 149,292 - +0.3 149,292 - +0.7 149,292 - -0.3 149,408 + H281DRAFT_04965 0.17 +0.7 149,471 + H281DRAFT_04965 0.24 +0.8 149,471 + H281DRAFT_04965 0.24 +0.5 149,471 + H281DRAFT_04965 0.24 +0.6 149,471 + H281DRAFT_04965 0.24 +0.1 149,471 + H281DRAFT_04965 0.24 +0.7 149,471 + H281DRAFT_04965 0.24 +0.2 149,472 - -0.9 149,472 - H281DRAFT_04965 0.24 +0.8 149,472 - H281DRAFT_04965 0.24 +0.1 149,575 + H281DRAFT_04965 0.36 +0.9 149,804 + H281DRAFT_04965 0.62 +0.2 149,869 - H281DRAFT_04965 0.69 +0.4 149,869 - H281DRAFT_04965 0.69 +0.3 149,901 - H281DRAFT_04965 0.73 +0.6 149,974 + H281DRAFT_04965 0.81 +0.5 149,975 - H281DRAFT_04965 0.81 +0.3 149,975 - H281DRAFT_04965 0.81 +0.5 150,051 - H281DRAFT_04965 0.90 +0.3 150,174 - +0.7 150,174 - +0.7 150,263 + -1.1 150,263 + +0.4 150,264 - +0.2 150,385 - H281DRAFT_04966 0.11 +0.1 150,525 + H281DRAFT_04966 0.46 -1.5 150,525 + H281DRAFT_04966 0.46 -0.2 150,526 - H281DRAFT_04966 0.46 +0.2 150,526 - H281DRAFT_04966 0.46 -0.4 150,811 + +2.1 150,844 - +0.6 150,844 - +0.0 150,987 + H281DRAFT_04967 0.33 -0.2 150,988 - H281DRAFT_04967 0.34 +0.1 151,090 + H281DRAFT_04967 0.55 +0.3 151,090 + H281DRAFT_04967 0.55 +0.8 151,090 + H281DRAFT_04967 0.55 +0.7 151,090 + H281DRAFT_04967 0.55 -1.1 151,090 + H281DRAFT_04967 0.55 -0.3 151,091 - H281DRAFT_04967 0.55 -0.8
Or see this region's nucleotide sequence