Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04896 and H281DRAFT_04897 are separated by 711 nucleotides H281DRAFT_04897 and H281DRAFT_04898 overlap by 1 nucleotides
H281DRAFT_04896: H281DRAFT_04896 - transcriptional regulator, AraC family with amidase-like domain, at 46,092 to 47,087
_04896
H281DRAFT_04897: H281DRAFT_04897 - Predicted Zn-dependent protease or its inactivated homolog, at 47,799 to 49,160
_04897
H281DRAFT_04898: H281DRAFT_04898 - Predicted Zn-dependent protease or its inactivated homolog, at 49,160 to 50,596
_04898
Position (kb) 47
48
49
50 Strain fitness (log2 ratio) -1
0
1 at 46.808 kb on - strand, within H281DRAFT_04896 at 46.820 kb on + strand, within H281DRAFT_04896 at 46.895 kb on - strand, within H281DRAFT_04896 at 47.107 kb on - strand at 47.249 kb on + strand at 47.301 kb on - strand at 47.454 kb on - strand at 47.454 kb on - strand at 47.674 kb on + strand at 48.061 kb on + strand, within H281DRAFT_04897 at 48.062 kb on - strand, within H281DRAFT_04897 at 48.062 kb on - strand, within H281DRAFT_04897 at 48.365 kb on - strand, within H281DRAFT_04897 at 48.365 kb on - strand, within H281DRAFT_04897 at 48.430 kb on - strand, within H281DRAFT_04897 at 48.575 kb on - strand, within H281DRAFT_04897 at 49.056 kb on - strand at 49.267 kb on - strand at 49.513 kb on + strand, within H281DRAFT_04898 at 50.020 kb on - strand, within H281DRAFT_04898 at 50.131 kb on + strand, within H281DRAFT_04898 at 50.132 kb on - strand, within H281DRAFT_04898 at 50.133 kb on + strand, within H281DRAFT_04898 at 50.134 kb on - strand, within H281DRAFT_04898 at 50.134 kb on - strand, within H281DRAFT_04898
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 46,808 - H281DRAFT_04896 0.72 -0.5 46,820 + H281DRAFT_04896 0.73 +0.0 46,895 - H281DRAFT_04896 0.81 +1.3 47,107 - +0.5 47,249 + -0.4 47,301 - +0.1 47,454 - +0.7 47,454 - +0.5 47,674 + +0.6 48,061 + H281DRAFT_04897 0.19 +1.3 48,062 - H281DRAFT_04897 0.19 +0.8 48,062 - H281DRAFT_04897 0.19 +0.6 48,365 - H281DRAFT_04897 0.42 +0.5 48,365 - H281DRAFT_04897 0.42 +1.1 48,430 - H281DRAFT_04897 0.46 +0.3 48,575 - H281DRAFT_04897 0.57 -0.6 49,056 - +0.2 49,267 - -0.4 49,513 + H281DRAFT_04898 0.25 +1.3 50,020 - H281DRAFT_04898 0.60 +0.3 50,131 + H281DRAFT_04898 0.68 -0.3 50,132 - H281DRAFT_04898 0.68 -0.3 50,133 + H281DRAFT_04898 0.68 +0.3 50,134 - H281DRAFT_04898 0.68 +0.1 50,134 - H281DRAFT_04898 0.68 -0.4
Or see this region's nucleotide sequence