Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04785 and H281DRAFT_04786 are separated by 60 nucleotides H281DRAFT_04786 and H281DRAFT_04787 are separated by 371 nucleotides
H281DRAFT_04785: H281DRAFT_04785 - Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains, at 208,430 to 209,578
_04785
H281DRAFT_04786: H281DRAFT_04786 - Glycosyltransferase involved in cell wall bisynthesis, at 209,639 to 210,841
_04786
H281DRAFT_04787: H281DRAFT_04787 - polysaccharide transporter, PST family, at 211,213 to 212,466
_04787
Position (kb) 209
210
211 Strain fitness (log2 ratio) -1
0
1
2 at 208.661 kb on + strand, within H281DRAFT_04785 at 208.697 kb on - strand, within H281DRAFT_04785 at 208.734 kb on - strand, within H281DRAFT_04785 at 208.734 kb on - strand, within H281DRAFT_04785 at 208.780 kb on + strand, within H281DRAFT_04785 at 208.781 kb on - strand, within H281DRAFT_04785 at 208.942 kb on - strand, within H281DRAFT_04785 at 209.024 kb on - strand, within H281DRAFT_04785 at 209.024 kb on - strand, within H281DRAFT_04785 at 209.075 kb on + strand, within H281DRAFT_04785 at 209.076 kb on - strand, within H281DRAFT_04785 at 209.312 kb on + strand, within H281DRAFT_04785 at 209.313 kb on - strand, within H281DRAFT_04785 at 209.696 kb on + strand at 209.697 kb on - strand at 209.874 kb on + strand, within H281DRAFT_04786 at 209.875 kb on - strand, within H281DRAFT_04786 at 210.115 kb on - strand, within H281DRAFT_04786 at 210.115 kb on - strand, within H281DRAFT_04786 at 210.144 kb on + strand, within H281DRAFT_04786 at 210.240 kb on + strand, within H281DRAFT_04786 at 210.241 kb on - strand, within H281DRAFT_04786 at 210.434 kb on - strand, within H281DRAFT_04786 at 210.552 kb on + strand, within H281DRAFT_04786 at 210.730 kb on - strand at 210.841 kb on + strand at 210.978 kb on - strand at 211.003 kb on + strand at 211.004 kb on - strand at 211.732 kb on + strand, within H281DRAFT_04787
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 208,661 + H281DRAFT_04785 0.20 +0.2 208,697 - H281DRAFT_04785 0.23 -0.4 208,734 - H281DRAFT_04785 0.26 -0.3 208,734 - H281DRAFT_04785 0.26 +0.1 208,780 + H281DRAFT_04785 0.30 +0.3 208,781 - H281DRAFT_04785 0.31 +0.6 208,942 - H281DRAFT_04785 0.45 +0.5 209,024 - H281DRAFT_04785 0.52 -0.4 209,024 - H281DRAFT_04785 0.52 -1.0 209,075 + H281DRAFT_04785 0.56 +2.3 209,076 - H281DRAFT_04785 0.56 -0.5 209,312 + H281DRAFT_04785 0.77 +0.0 209,313 - H281DRAFT_04785 0.77 +0.4 209,696 + +0.6 209,697 - +0.6 209,874 + H281DRAFT_04786 0.20 +0.7 209,875 - H281DRAFT_04786 0.20 +0.4 210,115 - H281DRAFT_04786 0.40 +0.0 210,115 - H281DRAFT_04786 0.40 +0.1 210,144 + H281DRAFT_04786 0.42 +0.6 210,240 + H281DRAFT_04786 0.50 +1.5 210,241 - H281DRAFT_04786 0.50 +1.5 210,434 - H281DRAFT_04786 0.66 +1.3 210,552 + H281DRAFT_04786 0.76 -1.0 210,730 - +1.1 210,841 + +0.3 210,978 - +0.4 211,003 + +0.5 211,004 - +0.1 211,732 + H281DRAFT_04787 0.41 -1.0
Or see this region's nucleotide sequence