Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04672 and H281DRAFT_04673 are separated by 147 nucleotides H281DRAFT_04673 and H281DRAFT_04674 are separated by 195 nucleotides H281DRAFT_04674 and H281DRAFT_04675 are separated by 81 nucleotides
H281DRAFT_04672: H281DRAFT_04672 - ATP-dependent DNA helicase RecG, at 75,055 to 77,445
_04672
H281DRAFT_04673: H281DRAFT_04673 - transcriptional regulator, LysR family, at 77,593 to 78,552
_04673
H281DRAFT_04674: H281DRAFT_04674 - hypothetical protein, at 78,748 to 78,885
_04674
H281DRAFT_04675: H281DRAFT_04675 - catalase, at 78,967 to 80,421
_04675
Position (kb) 77
78
79 Strain fitness (log2 ratio) -1
0
1
2 at 76.681 kb on + strand, within H281DRAFT_04672 at 76.681 kb on + strand, within H281DRAFT_04672 at 76.682 kb on - strand, within H281DRAFT_04672 at 76.700 kb on + strand, within H281DRAFT_04672 at 76.980 kb on + strand, within H281DRAFT_04672 at 77.155 kb on + strand at 77.155 kb on + strand, within H281DRAFT_04672 at 77.378 kb on - strand at 77.444 kb on - strand at 77.541 kb on + strand at 77.615 kb on - strand at 77.615 kb on - strand at 77.727 kb on - strand, within H281DRAFT_04673 at 77.888 kb on - strand, within H281DRAFT_04673 at 77.902 kb on + strand, within H281DRAFT_04673 at 77.903 kb on - strand, within H281DRAFT_04673 at 77.903 kb on - strand, within H281DRAFT_04673 at 78.395 kb on - strand, within H281DRAFT_04673 at 78.395 kb on - strand, within H281DRAFT_04673 at 78.395 kb on - strand, within H281DRAFT_04673 at 78.395 kb on - strand, within H281DRAFT_04673 at 78.457 kb on - strand at 78.701 kb on - strand at 78.895 kb on + strand at 78.895 kb on + strand at 79.068 kb on - strand at 79.068 kb on - strand at 79.068 kb on - strand at 79.173 kb on + strand, within H281DRAFT_04675 at 79.183 kb on + strand, within H281DRAFT_04675 at 79.184 kb on - strand, within H281DRAFT_04675 at 79.420 kb on + strand, within H281DRAFT_04675
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 76,681 + H281DRAFT_04672 0.68 +0.9 76,681 + H281DRAFT_04672 0.68 -0.7 76,682 - H281DRAFT_04672 0.68 +0.4 76,700 + H281DRAFT_04672 0.69 -0.1 76,980 + H281DRAFT_04672 0.81 -0.8 77,155 + -0.1 77,155 + H281DRAFT_04672 0.88 +1.4 77,378 - +0.7 77,444 - +1.5 77,541 + -0.5 77,615 - +0.2 77,615 - -0.0 77,727 - H281DRAFT_04673 0.14 +1.4 77,888 - H281DRAFT_04673 0.31 -1.0 77,902 + H281DRAFT_04673 0.32 +1.0 77,903 - H281DRAFT_04673 0.32 -0.3 77,903 - H281DRAFT_04673 0.32 -0.8 78,395 - H281DRAFT_04673 0.84 +0.0 78,395 - H281DRAFT_04673 0.84 +1.9 78,395 - H281DRAFT_04673 0.84 +1.7 78,395 - H281DRAFT_04673 0.84 +1.0 78,457 - +0.1 78,701 - -0.0 78,895 + +0.1 78,895 + +0.8 79,068 - +0.1 79,068 - -0.3 79,068 - -0.4 79,173 + H281DRAFT_04675 0.14 +0.2 79,183 + H281DRAFT_04675 0.15 +1.3 79,184 - H281DRAFT_04675 0.15 +0.1 79,420 + H281DRAFT_04675 0.31 +0.2
Or see this region's nucleotide sequence