Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04465 and H281DRAFT_04466 are separated by 126 nucleotides H281DRAFT_04466 and H281DRAFT_04467 are separated by 118 nucleotides H281DRAFT_04467 and H281DRAFT_04468 are separated by 70 nucleotides
H281DRAFT_04465: H281DRAFT_04465 - myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase, at 189,382 to 190,428
_04465
H281DRAFT_04466: H281DRAFT_04466 - TusA-related sulfurtransferase, at 190,555 to 190,788
_04466
H281DRAFT_04467: H281DRAFT_04467 - UDP-glucose pyrophosphorylase, at 190,907 to 191,788
_04467
H281DRAFT_04468: H281DRAFT_04468 - valyl-tRNA synthetase, at 191,859 to 194,738
_04468
Position (kb) 190
191
192 Strain fitness (log2 ratio) -1
0
1 at 190.427 kb on - strand at 190.909 kb on - strand at 190.941 kb on + strand at 190.941 kb on + strand at 191.005 kb on - strand, within H281DRAFT_04467 at 191.005 kb on - strand, within H281DRAFT_04467 at 191.005 kb on - strand, within H281DRAFT_04467 at 191.043 kb on + strand, within H281DRAFT_04467 at 191.043 kb on + strand, within H281DRAFT_04467 at 191.044 kb on - strand, within H281DRAFT_04467 at 191.050 kb on - strand, within H281DRAFT_04467 at 191.050 kb on - strand, within H281DRAFT_04467 at 191.166 kb on + strand, within H281DRAFT_04467 at 191.166 kb on + strand, within H281DRAFT_04467 at 191.166 kb on + strand, within H281DRAFT_04467 at 191.166 kb on + strand, within H281DRAFT_04467 at 191.167 kb on - strand, within H281DRAFT_04467 at 191.167 kb on - strand, within H281DRAFT_04467 at 191.273 kb on - strand, within H281DRAFT_04467 at 191.332 kb on - strand, within H281DRAFT_04467 at 191.380 kb on - strand, within H281DRAFT_04467 at 191.484 kb on + strand, within H281DRAFT_04467 at 191.485 kb on - strand, within H281DRAFT_04467 at 191.582 kb on - strand, within H281DRAFT_04467 at 191.765 kb on + strand at 191.784 kb on - strand at 191.813 kb on + strand at 191.813 kb on + strand at 191.814 kb on - strand at 191.814 kb on - strand at 191.814 kb on - strand at 191.817 kb on + strand at 191.817 kb on + strand at 191.817 kb on + strand at 191.818 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 190,427 - -0.7 190,909 - +0.4 190,941 + +0.1 190,941 + +0.8 191,005 - H281DRAFT_04467 0.11 +0.5 191,005 - H281DRAFT_04467 0.11 +1.1 191,005 - H281DRAFT_04467 0.11 -0.1 191,043 + H281DRAFT_04467 0.15 +0.7 191,043 + H281DRAFT_04467 0.15 +1.1 191,044 - H281DRAFT_04467 0.16 +0.4 191,050 - H281DRAFT_04467 0.16 +1.1 191,050 - H281DRAFT_04467 0.16 +0.9 191,166 + H281DRAFT_04467 0.29 +0.3 191,166 + H281DRAFT_04467 0.29 +0.9 191,166 + H281DRAFT_04467 0.29 +0.3 191,166 + H281DRAFT_04467 0.29 +0.2 191,167 - H281DRAFT_04467 0.29 -0.3 191,167 - H281DRAFT_04467 0.29 +0.3 191,273 - H281DRAFT_04467 0.41 +0.6 191,332 - H281DRAFT_04467 0.48 -0.6 191,380 - H281DRAFT_04467 0.54 +0.5 191,484 + H281DRAFT_04467 0.65 +0.6 191,485 - H281DRAFT_04467 0.66 +1.0 191,582 - H281DRAFT_04467 0.77 +0.5 191,765 + +0.3 191,784 - +0.7 191,813 + +0.1 191,813 + -1.3 191,814 - +0.8 191,814 - -0.4 191,814 - -0.1 191,817 + +0.1 191,817 + +0.2 191,817 + +0.6 191,818 - +0.4
Or see this region's nucleotide sequence