Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04390

Experiment: Protocatechuic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_04389 and H281DRAFT_04390 are separated by 98 nucleotidesH281DRAFT_04390 and H281DRAFT_04391 are separated by 620 nucleotides H281DRAFT_04389: H281DRAFT_04389 - trehalose 6-phosphate synthase, at 102,047 to 103,507 _04389 H281DRAFT_04390: H281DRAFT_04390 - ATP-binding cassette, subfamily B, at 103,606 to 105,528 _04390 H281DRAFT_04391: H281DRAFT_04391 - Glycosyltransferase involved in cell wall bisynthesis, at 106,149 to 107,213 _04391 Position (kb) 103 104 105 106Strain fitness (log2 ratio) -1 0 1at 102.746 kb on + strand, within H281DRAFT_04389at 102.814 kb on + strand, within H281DRAFT_04389at 102.814 kb on + strand, within H281DRAFT_04389at 102.860 kb on + strand, within H281DRAFT_04389at 102.861 kb on - strand, within H281DRAFT_04389at 102.983 kb on + strand, within H281DRAFT_04389at 102.984 kb on - strand, within H281DRAFT_04389at 102.984 kb on - strand, within H281DRAFT_04389at 103.067 kb on + strand, within H281DRAFT_04389at 103.067 kb on + strand, within H281DRAFT_04389at 103.075 kb on + strand, within H281DRAFT_04389at 103.075 kb on + strand, within H281DRAFT_04389at 103.075 kb on + strand, within H281DRAFT_04389at 103.076 kb on - strand, within H281DRAFT_04389at 103.083 kb on - strand, within H281DRAFT_04389at 103.175 kb on + strand, within H281DRAFT_04389at 103.175 kb on + strand, within H281DRAFT_04389at 103.175 kb on + strand, within H281DRAFT_04389at 103.176 kb on - strand, within H281DRAFT_04389at 103.176 kb on - strand, within H281DRAFT_04389at 103.555 kb on + strandat 103.577 kb on + strandat 103.612 kb on - strandat 103.612 kb on - strandat 103.992 kb on + strand, within H281DRAFT_04390at 104.225 kb on + strand, within H281DRAFT_04390at 104.526 kb on + strand, within H281DRAFT_04390at 104.527 kb on - strand, within H281DRAFT_04390at 104.527 kb on - strand, within H281DRAFT_04390at 104.574 kb on + strand, within H281DRAFT_04390at 104.575 kb on - strand, within H281DRAFT_04390at 104.575 kb on - strand, within H281DRAFT_04390at 104.666 kb on + strand, within H281DRAFT_04390at 104.666 kb on + strand, within H281DRAFT_04390at 104.858 kb on + strand, within H281DRAFT_04390at 104.858 kb on + strand, within H281DRAFT_04390at 104.858 kb on + strand, within H281DRAFT_04390at 104.858 kb on + strand, within H281DRAFT_04390at 104.858 kb on + strand, within H281DRAFT_04390at 104.859 kb on - strand, within H281DRAFT_04390at 104.859 kb on - strand, within H281DRAFT_04390at 104.859 kb on - strand, within H281DRAFT_04390at 105.059 kb on + strand, within H281DRAFT_04390at 105.060 kb on - strand, within H281DRAFT_04390at 105.060 kb on - strand, within H281DRAFT_04390at 105.062 kb on + strand, within H281DRAFT_04390at 105.062 kb on + strand, within H281DRAFT_04390at 105.062 kb on + strand, within H281DRAFT_04390at 105.063 kb on - strand, within H281DRAFT_04390at 105.063 kb on - strand, within H281DRAFT_04390at 105.063 kb on - strand, within H281DRAFT_04390at 105.086 kb on + strand, within H281DRAFT_04390at 105.087 kb on - strand, within H281DRAFT_04390at 105.272 kb on + strand, within H281DRAFT_04390at 105.272 kb on + strand, within H281DRAFT_04390at 105.273 kb on - strand, within H281DRAFT_04390at 105.273 kb on - strand, within H281DRAFT_04390at 105.386 kb on + strandat 105.386 kb on + strandat 105.386 kb on + strandat 105.387 kb on - strandat 105.387 kb on - strandat 105.387 kb on - strandat 105.531 kb on + strandat 105.580 kb on + strandat 105.581 kb on - strandat 105.581 kb on - strandat 105.607 kb on + strandat 105.607 kb on + strandat 105.607 kb on + strandat 105.607 kb on + strandat 105.608 kb on - strandat 105.670 kb on + strandat 105.675 kb on - strandat 105.742 kb on + strandat 105.742 kb on + strandat 105.793 kb on + strandat 105.793 kb on + strandat 105.794 kb on - strandat 105.799 kb on - strandat 105.811 kb on + strandat 105.834 kb on - strandat 105.844 kb on + strandat 105.844 kb on + strandat 105.844 kb on + strandat 105.844 kb on + strandat 105.844 kb on + strandat 105.844 kb on + strandat 105.845 kb on - strandat 106.022 kb on + strandat 106.045 kb on + strandat 106.045 kb on + strandat 106.105 kb on - strandat 106.131 kb on + strandat 106.132 kb on - strandat 106.200 kb on + strandat 106.200 kb on + strandat 106.200 kb on + strandat 106.200 kb on + strandat 106.201 kb on - strandat 106.227 kb on + strandat 106.228 kb on - strandat 106.228 kb on - strandat 106.228 kb on - strandat 106.438 kb on - strand, within H281DRAFT_04391at 106.438 kb on - strand, within H281DRAFT_04391at 106.438 kb on - strand, within H281DRAFT_04391at 106.438 kb on - strand, within H281DRAFT_04391at 106.438 kb on - strand, within H281DRAFT_04391

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
remove
102,746 + H281DRAFT_04389 0.48 +0.4
102,814 + H281DRAFT_04389 0.52 -0.3
102,814 + H281DRAFT_04389 0.52 +0.9
102,860 + H281DRAFT_04389 0.56 +0.6
102,861 - H281DRAFT_04389 0.56 +0.8
102,983 + H281DRAFT_04389 0.64 +0.5
102,984 - H281DRAFT_04389 0.64 +0.5
102,984 - H281DRAFT_04389 0.64 +1.2
103,067 + H281DRAFT_04389 0.70 +0.1
103,067 + H281DRAFT_04389 0.70 -0.3
103,075 + H281DRAFT_04389 0.70 +0.1
103,075 + H281DRAFT_04389 0.70 -0.1
103,075 + H281DRAFT_04389 0.70 -0.3
103,076 - H281DRAFT_04389 0.70 +0.0
103,083 - H281DRAFT_04389 0.71 +1.2
103,175 + H281DRAFT_04389 0.77 -0.4
103,175 + H281DRAFT_04389 0.77 -0.0
103,175 + H281DRAFT_04389 0.77 +0.2
103,176 - H281DRAFT_04389 0.77 +0.6
103,176 - H281DRAFT_04389 0.77 -0.6
103,555 + +0.3
103,577 + -0.7
103,612 - -0.6
103,612 - +0.3
103,992 + H281DRAFT_04390 0.20 +0.4
104,225 + H281DRAFT_04390 0.32 +0.5
104,526 + H281DRAFT_04390 0.48 -1.0
104,527 - H281DRAFT_04390 0.48 +1.1
104,527 - H281DRAFT_04390 0.48 +0.8
104,574 + H281DRAFT_04390 0.50 +0.7
104,575 - H281DRAFT_04390 0.50 +0.2
104,575 - H281DRAFT_04390 0.50 +1.1
104,666 + H281DRAFT_04390 0.55 +0.5
104,666 + H281DRAFT_04390 0.55 +0.4
104,858 + H281DRAFT_04390 0.65 +0.7
104,858 + H281DRAFT_04390 0.65 +0.6
104,858 + H281DRAFT_04390 0.65 +1.0
104,858 + H281DRAFT_04390 0.65 +1.4
104,858 + H281DRAFT_04390 0.65 +0.5
104,859 - H281DRAFT_04390 0.65 +0.9
104,859 - H281DRAFT_04390 0.65 +0.9
104,859 - H281DRAFT_04390 0.65 +0.6
105,059 + H281DRAFT_04390 0.76 +0.4
105,060 - H281DRAFT_04390 0.76 +0.5
105,060 - H281DRAFT_04390 0.76 +1.0
105,062 + H281DRAFT_04390 0.76 +1.6
105,062 + H281DRAFT_04390 0.76 +1.0
105,062 + H281DRAFT_04390 0.76 +1.6
105,063 - H281DRAFT_04390 0.76 +0.6
105,063 - H281DRAFT_04390 0.76 +1.0
105,063 - H281DRAFT_04390 0.76 +0.6
105,086 + H281DRAFT_04390 0.77 +0.7
105,087 - H281DRAFT_04390 0.77 +0.4
105,272 + H281DRAFT_04390 0.87 +0.7
105,272 + H281DRAFT_04390 0.87 +1.4
105,273 - H281DRAFT_04390 0.87 +0.5
105,273 - H281DRAFT_04390 0.87 +0.6
105,386 + +1.6
105,386 + +0.7
105,386 + +1.0
105,387 - +0.2
105,387 - +1.4
105,387 - +1.4
105,531 + +0.2
105,580 + +0.1
105,581 - +0.2
105,581 - -0.4
105,607 + +0.8
105,607 + +0.8
105,607 + -0.1
105,607 + +0.5
105,608 - -0.5
105,670 + +1.5
105,675 - +0.2
105,742 + +0.2
105,742 + +0.3
105,793 + +0.4
105,793 + +0.8
105,794 - -0.1
105,799 - +0.7
105,811 + -0.2
105,834 - +0.1
105,844 + +0.0
105,844 + +0.4
105,844 + +0.5
105,844 + -0.1
105,844 + +0.6
105,844 + -0.5
105,845 - -0.3
106,022 + -0.2
106,045 + -0.1
106,045 + +0.4
106,105 - +0.5
106,131 + -0.1
106,132 - -0.1
106,200 + +0.7
106,200 + +0.5
106,200 + +1.4
106,200 + +0.5
106,201 - +0.2
106,227 + +0.8
106,228 - +0.9
106,228 - +1.0
106,228 - +0.8
106,438 - H281DRAFT_04391 0.27 +0.6
106,438 - H281DRAFT_04391 0.27 +1.3
106,438 - H281DRAFT_04391 0.27 +1.2
106,438 - H281DRAFT_04391 0.27 +1.1
106,438 - H281DRAFT_04391 0.27 +1.0

Or see this region's nucleotide sequence