Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03880 and H281DRAFT_03881 are separated by 14 nucleotides H281DRAFT_03881 and H281DRAFT_03882 are separated by 26 nucleotides H281DRAFT_03882 and H281DRAFT_03883 are separated by 103 nucleotides H281DRAFT_03883 and H281DRAFT_03884 overlap by 4 nucleotides
H281DRAFT_03880: H281DRAFT_03880 - isoquinoline 1-oxidoreductase, beta subunit, at 410,223 to 412,490
_03880
H281DRAFT_03881: H281DRAFT_03881 - isoquinoline 1-oxidoreductase, alpha subunit, at 412,505 to 412,963
_03881
H281DRAFT_03882: H281DRAFT_03882 - hypothetical protein, at 412,990 to 413,082
_03882
H281DRAFT_03883: H281DRAFT_03883 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 413,186 to 414,778
_03883
H281DRAFT_03884: H281DRAFT_03884 - RND family efflux transporter, MFP subunit, at 414,775 to 415,791
_03884
H281DRAFT_03885: H281DRAFT_03885 - Protein of unknown function (DUF1656), at 415,739 to 415,948
_03885
Position (kb) 413
414
415 Strain fitness (log2 ratio) -1
0
1 at 412.703 kb on - strand, within H281DRAFT_03881 at 412.893 kb on + strand, within H281DRAFT_03881 at 412.893 kb on + strand, within H281DRAFT_03881 at 412.894 kb on - strand, within H281DRAFT_03881 at 412.894 kb on - strand, within H281DRAFT_03881 at 413.083 kb on - strand at 413.119 kb on + strand at 413.119 kb on + strand at 413.120 kb on - strand at 413.168 kb on + strand at 413.369 kb on + strand, within H281DRAFT_03883 at 413.370 kb on - strand, within H281DRAFT_03883 at 413.493 kb on + strand, within H281DRAFT_03883 at 413.770 kb on + strand, within H281DRAFT_03883 at 413.989 kb on + strand, within H281DRAFT_03883 at 413.990 kb on - strand, within H281DRAFT_03883 at 414.060 kb on - strand, within H281DRAFT_03883 at 414.502 kb on - strand, within H281DRAFT_03883 at 415.484 kb on + strand, within H281DRAFT_03884 at 415.543 kb on + strand, within H281DRAFT_03884 at 415.637 kb on + strand, within H281DRAFT_03884 at 415.638 kb on - strand, within H281DRAFT_03884 at 415.638 kb on - strand, within H281DRAFT_03884 at 415.641 kb on - strand, within H281DRAFT_03884
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 412,703 - H281DRAFT_03881 0.43 +0.0 412,893 + H281DRAFT_03881 0.85 -0.3 412,893 + H281DRAFT_03881 0.85 -0.0 412,894 - H281DRAFT_03881 0.85 -0.5 412,894 - H281DRAFT_03881 0.85 -0.5 413,083 - +0.3 413,119 + +1.1 413,119 + -0.0 413,120 - +0.5 413,168 + +1.7 413,369 + H281DRAFT_03883 0.11 +0.1 413,370 - H281DRAFT_03883 0.12 -1.6 413,493 + H281DRAFT_03883 0.19 -0.1 413,770 + H281DRAFT_03883 0.37 +1.6 413,989 + H281DRAFT_03883 0.50 -0.3 413,990 - H281DRAFT_03883 0.50 +0.6 414,060 - H281DRAFT_03883 0.55 +1.2 414,502 - H281DRAFT_03883 0.83 +0.7 415,484 + H281DRAFT_03884 0.70 +0.4 415,543 + H281DRAFT_03884 0.76 +0.5 415,637 + H281DRAFT_03884 0.85 -0.0 415,638 - H281DRAFT_03884 0.85 +0.6 415,638 - H281DRAFT_03884 0.85 +0.6 415,641 - H281DRAFT_03884 0.85 -0.5
Or see this region's nucleotide sequence