Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03863 and H281DRAFT_03864 are separated by 144 nucleotides H281DRAFT_03864 and H281DRAFT_03865 are separated by 3 nucleotides H281DRAFT_03865 and H281DRAFT_03866 are separated by 105 nucleotides
H281DRAFT_03863: H281DRAFT_03863 - D-alanyl-D-alanine carboxypeptidase, at 392,449 to 393,111
_03863
H281DRAFT_03864: H281DRAFT_03864 - protocatechuate 3,4-dioxygenase, alpha subunit, at 393,256 to 393,843
_03864
H281DRAFT_03865: H281DRAFT_03865 - protocatechuate 3,4-dioxygenase, beta subunit, at 393,847 to 394,551
_03865
H281DRAFT_03866: H281DRAFT_03866 - transcriptional regulator, LysR family, at 394,657 to 395,655
_03866
Position (kb) 393
394 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 392.283 kb on - strand at 392.375 kb on + strand at 392.900 kb on - strand, within H281DRAFT_03863 at 393.259 kb on + strand at 393.260 kb on - strand at 393.260 kb on - strand at 393.260 kb on - strand at 393.295 kb on - strand at 393.296 kb on + strand at 393.296 kb on + strand at 393.296 kb on + strand at 393.297 kb on - strand at 393.311 kb on + strand at 393.423 kb on - strand at 393.423 kb on - strand, within H281DRAFT_03864 at 393.475 kb on + strand, within H281DRAFT_03864 at 393.702 kb on + strand, within H281DRAFT_03864 at 393.703 kb on - strand, within H281DRAFT_03864 at 393.771 kb on - strand, within H281DRAFT_03864 at 393.849 kb on - strand at 394.022 kb on + strand, within H281DRAFT_03865 at 394.022 kb on + strand, within H281DRAFT_03865 at 394.023 kb on - strand, within H281DRAFT_03865 at 394.023 kb on - strand, within H281DRAFT_03865 at 394.227 kb on + strand, within H281DRAFT_03865 at 394.227 kb on + strand, within H281DRAFT_03865 at 394.235 kb on + strand, within H281DRAFT_03865 at 394.496 kb on + strand at 394.497 kb on - strand at 394.502 kb on + strand at 394.503 kb on - strand at 394.584 kb on + strand at 394.585 kb on - strand at 394.597 kb on + strand at 394.597 kb on + strand at 394.701 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 392,283 - +0.1 392,375 + +0.3 392,900 - H281DRAFT_03863 0.68 +0.1 393,259 + -1.3 393,260 - -0.7 393,260 - -1.8 393,260 - -1.0 393,295 - -1.4 393,296 + -2.2 393,296 + -4.1 393,296 + -2.3 393,297 - +0.3 393,311 + -1.6 393,423 - -1.2 393,423 - H281DRAFT_03864 0.28 -2.5 393,475 + H281DRAFT_03864 0.37 -4.4 393,702 + H281DRAFT_03864 0.76 -4.1 393,703 - H281DRAFT_03864 0.76 -4.6 393,771 - H281DRAFT_03864 0.88 -2.2 393,849 - -2.0 394,022 + H281DRAFT_03865 0.25 -4.7 394,022 + H281DRAFT_03865 0.25 -1.0 394,023 - H281DRAFT_03865 0.25 -2.5 394,023 - H281DRAFT_03865 0.25 -3.0 394,227 + H281DRAFT_03865 0.54 -3.3 394,227 + H281DRAFT_03865 0.54 -3.5 394,235 + H281DRAFT_03865 0.55 -1.5 394,496 + -2.2 394,497 - -2.3 394,502 + -3.2 394,503 - -0.8 394,584 + -1.7 394,585 - -2.8 394,597 + -1.9 394,597 + -3.6 394,701 - -4.1
Or see this region's nucleotide sequence