Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03493 and H281DRAFT_03494 are separated by 284 nucleotides H281DRAFT_03494 and H281DRAFT_03495 are separated by 35 nucleotides H281DRAFT_03495 and H281DRAFT_03496 are separated by 114 nucleotides H281DRAFT_03496 and H281DRAFT_03497 are separated by 439 nucleotides
H281DRAFT_03493: H281DRAFT_03493 - TIGR03118 family protein, at 578,350 to 579,522
_03493
H281DRAFT_03494: H281DRAFT_03494 - Alkylhydroperoxidase family enzyme, contains CxxC motif, at 579,807 to 580,364
_03494
H281DRAFT_03495: H281DRAFT_03495 - transcriptional regulator, XRE family, at 580,400 to 581,245
_03495
H281DRAFT_03496: H281DRAFT_03496 - hypothetical protein, at 581,360 to 581,569
_03496
H281DRAFT_03497: H281DRAFT_03497 - transcriptional regulator, DeoR family, at 582,009 to 582,764
_03497
Position (kb) 580
581
582 Strain fitness (log2 ratio) -1
0
1 at 579.622 kb on - strand at 579.622 kb on - strand at 579.641 kb on - strand at 579.727 kb on - strand at 579.752 kb on + strand at 579.825 kb on + strand at 579.826 kb on - strand at 580.367 kb on + strand at 580.380 kb on - strand at 580.847 kb on - strand, within H281DRAFT_03495 at 581.160 kb on + strand, within H281DRAFT_03495 at 581.161 kb on - strand at 581.459 kb on - strand, within H281DRAFT_03496 at 581.466 kb on - strand, within H281DRAFT_03496 at 581.770 kb on + strand at 581.770 kb on + strand at 581.792 kb on - strand at 581.871 kb on + strand at 581.871 kb on + strand at 581.872 kb on - strand at 581.925 kb on - strand at 581.928 kb on + strand at 581.928 kb on + strand at 581.928 kb on + strand at 581.928 kb on + strand at 581.929 kb on - strand at 581.929 kb on - strand at 581.929 kb on - strand at 581.929 kb on - strand at 582.033 kb on + strand at 582.034 kb on - strand at 582.034 kb on - strand at 582.034 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 579,622 - +0.1 579,622 - +0.6 579,641 - +0.0 579,727 - +0.5 579,752 + +0.3 579,825 + +0.6 579,826 - -0.3 580,367 + +0.8 580,380 - -0.0 580,847 - H281DRAFT_03495 0.53 +0.2 581,160 + H281DRAFT_03495 0.90 +1.0 581,161 - +0.3 581,459 - H281DRAFT_03496 0.47 -0.5 581,466 - H281DRAFT_03496 0.50 -0.1 581,770 + -0.1 581,770 + -0.3 581,792 - -0.5 581,871 + +1.1 581,871 + -0.4 581,872 - +0.3 581,925 - +0.9 581,928 + +0.3 581,928 + -0.5 581,928 + -0.2 581,928 + -0.5 581,929 - +0.7 581,929 - -1.0 581,929 - -0.3 581,929 - +0.6 582,033 + -0.6 582,034 - -0.2 582,034 - +0.3 582,034 - -0.1
Or see this region's nucleotide sequence