Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03277

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03275 and H281DRAFT_03276 are separated by 91 nucleotidesH281DRAFT_03276 and H281DRAFT_03277 are separated by 140 nucleotidesH281DRAFT_03277 and H281DRAFT_03278 are separated by 205 nucleotides H281DRAFT_03275: H281DRAFT_03275 - Threonine dehydrogenase, at 331,584 to 332,753 _03275 H281DRAFT_03276: H281DRAFT_03276 - hypothetical protein, at 332,845 to 333,456 _03276 H281DRAFT_03277: H281DRAFT_03277 - hypothetical protein, at 333,597 to 333,854 _03277 H281DRAFT_03278: H281DRAFT_03278 - Threonine dehydrogenase, at 334,060 to 335,268 _03278 Position (kb) 333 334Strain fitness (log2 ratio) -1 0 1at 332.698 kb on - strandat 332.794 kb on + strandat 332.939 kb on - strand, within H281DRAFT_03276at 332.939 kb on - strand, within H281DRAFT_03276at 333.065 kb on + strand, within H281DRAFT_03276at 333.277 kb on + strand, within H281DRAFT_03276at 333.277 kb on + strand, within H281DRAFT_03276at 333.455 kb on - strandat 333.472 kb on + strandat 333.686 kb on - strand, within H281DRAFT_03277at 334.019 kb on + strandat 334.074 kb on - strandat 334.189 kb on - strand, within H281DRAFT_03278

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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332,698 - -0.1
332,794 + -0.1
332,939 - H281DRAFT_03276 0.15 -0.0
332,939 - H281DRAFT_03276 0.15 +0.6
333,065 + H281DRAFT_03276 0.36 -0.4
333,277 + H281DRAFT_03276 0.71 +0.4
333,277 + H281DRAFT_03276 0.71 +0.5
333,455 - +0.1
333,472 + -0.0
333,686 - H281DRAFT_03277 0.34 +0.4
334,019 + -0.6
334,074 - +0.8
334,189 - H281DRAFT_03278 0.11 -0.2

Or see this region's nucleotide sequence