Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03224

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03223 and H281DRAFT_03224 are separated by 24 nucleotidesH281DRAFT_03224 and H281DRAFT_03225 are separated by 73 nucleotides H281DRAFT_03223: H281DRAFT_03223 - Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain, at 273,656 to 274,888 _03223 H281DRAFT_03224: H281DRAFT_03224 - mannose ABC transporter ATP-binding protein /fructose ABC transporter ATP-binding protein /ribose ABC transporter ATP-binding protein, at 274,913 to 275,710 _03224 H281DRAFT_03225: H281DRAFT_03225 - mannose ABC transporter membrane protein /fructose ABC transporter membrane protein /ribose ABC transporter membrane protein, at 275,784 to 276,770 _03225 Position (kb) 274 275 276Strain fitness (log2 ratio) -1 0 1at 274.586 kb on + strand, within H281DRAFT_03223at 274.976 kb on - strandat 275.065 kb on + strand, within H281DRAFT_03224at 275.699 kb on - strandat 275.699 kb on - strandat 275.766 kb on - strandat 275.851 kb on - strandat 276.211 kb on + strand, within H281DRAFT_03225at 276.212 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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274,586 + H281DRAFT_03223 0.75 +0.3
274,976 - +0.3
275,065 + H281DRAFT_03224 0.19 +0.6
275,699 - -1.3
275,699 - -0.7
275,766 - -0.0
275,851 - +0.3
276,211 + H281DRAFT_03225 0.43 -0.8
276,212 - -0.1

Or see this region's nucleotide sequence