Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03129 and H281DRAFT_03130 are separated by 173 nucleotides H281DRAFT_03130 and H281DRAFT_03131 are separated by 475 nucleotides
H281DRAFT_03129: H281DRAFT_03129 - oligopeptide transport system substrate-binding protein, at 162,691 to 164,307
_03129
H281DRAFT_03130: H281DRAFT_03130 - transcriptional regulator, XRE family with cupin sensor, at 164,481 to 165,053
_03130
H281DRAFT_03131: H281DRAFT_03131 - proton-dependent oligopeptide transporter, POT family, at 165,529 to 167,070
_03131
Position (kb) 164
165
166 Strain fitness (log2 ratio) -2
-1
0
1 at 163.487 kb on + strand, within H281DRAFT_03129 at 163.487 kb on + strand, within H281DRAFT_03129 at 163.488 kb on - strand, within H281DRAFT_03129 at 163.509 kb on - strand, within H281DRAFT_03129 at 163.575 kb on - strand, within H281DRAFT_03129 at 163.670 kb on + strand, within H281DRAFT_03129 at 163.671 kb on - strand, within H281DRAFT_03129 at 163.910 kb on + strand, within H281DRAFT_03129 at 164.259 kb on + strand at 164.642 kb on - strand, within H281DRAFT_03130 at 164.642 kb on - strand, within H281DRAFT_03130 at 165.090 kb on - strand at 165.179 kb on + strand at 165.180 kb on - strand at 165.180 kb on - strand at 165.180 kb on - strand at 165.287 kb on - strand at 165.392 kb on - strand at 165.392 kb on - strand at 165.523 kb on + strand at 165.797 kb on + strand, within H281DRAFT_03131 at 165.857 kb on - strand, within H281DRAFT_03131 at 165.931 kb on + strand, within H281DRAFT_03131 at 165.973 kb on + strand, within H281DRAFT_03131 at 165.976 kb on + strand, within H281DRAFT_03131 at 165.977 kb on - strand, within H281DRAFT_03131
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 163,487 + H281DRAFT_03129 0.49 +0.0 163,487 + H281DRAFT_03129 0.49 +0.2 163,488 - H281DRAFT_03129 0.49 -0.2 163,509 - H281DRAFT_03129 0.51 -0.2 163,575 - H281DRAFT_03129 0.55 -0.4 163,670 + H281DRAFT_03129 0.61 +0.7 163,671 - H281DRAFT_03129 0.61 +0.3 163,910 + H281DRAFT_03129 0.75 +1.0 164,259 + -0.5 164,642 - H281DRAFT_03130 0.28 +0.8 164,642 - H281DRAFT_03130 0.28 +0.3 165,090 - +0.5 165,179 + -2.3 165,180 - +0.4 165,180 - +0.7 165,180 - +1.1 165,287 - +0.0 165,392 - +0.3 165,392 - -0.1 165,523 + +0.2 165,797 + H281DRAFT_03131 0.17 +0.3 165,857 - H281DRAFT_03131 0.21 +0.8 165,931 + H281DRAFT_03131 0.26 -0.1 165,973 + H281DRAFT_03131 0.29 -1.2 165,976 + H281DRAFT_03131 0.29 +0.6 165,977 - H281DRAFT_03131 0.29 -0.3
Or see this region's nucleotide sequence