Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03091 and H281DRAFT_03092 overlap by 4 nucleotides H281DRAFT_03092 and H281DRAFT_03093 are separated by 63 nucleotides H281DRAFT_03093 and H281DRAFT_03094 are separated by 86 nucleotides
H281DRAFT_03091: H281DRAFT_03091 - Uncharacterized conserved protein, circularly permuted ATPgrasp superfamily, at 123,243 to 125,876
_03091
H281DRAFT_03092: H281DRAFT_03092 - Transglutaminase-like enzyme, putative cysteine protease, at 125,873 to 126,763
_03092
H281DRAFT_03093: H281DRAFT_03093 - transcriptional regulator, MarR family, at 126,827 to 127,249
_03093
H281DRAFT_03094: H281DRAFT_03094 - transcriptional regulator, MarR family, at 127,336 to 127,755
_03094
Position (kb) 125
126
127 Strain fitness (log2 ratio) -1
0
1
2 at 125.021 kb on + strand, within H281DRAFT_03091 at 125.265 kb on - strand, within H281DRAFT_03091 at 125.265 kb on - strand, within H281DRAFT_03091 at 125.363 kb on + strand, within H281DRAFT_03091 at 125.364 kb on - strand, within H281DRAFT_03091 at 125.408 kb on + strand at 125.524 kb on - strand, within H281DRAFT_03091 at 125.524 kb on - strand, within H281DRAFT_03091 at 125.575 kb on + strand, within H281DRAFT_03091 at 125.575 kb on + strand, within H281DRAFT_03091 at 125.576 kb on - strand, within H281DRAFT_03091 at 125.579 kb on - strand, within H281DRAFT_03091 at 125.617 kb on - strand at 125.919 kb on - strand at 125.924 kb on + strand at 125.933 kb on + strand at 125.934 kb on - strand at 125.934 kb on - strand at 125.998 kb on - strand, within H281DRAFT_03092 at 126.033 kb on - strand, within H281DRAFT_03092 at 126.040 kb on + strand, within H281DRAFT_03092 at 126.263 kb on - strand, within H281DRAFT_03092 at 126.374 kb on + strand, within H281DRAFT_03092 at 126.400 kb on + strand, within H281DRAFT_03092 at 127.103 kb on + strand at 127.271 kb on + strand at 127.272 kb on - strand at 127.272 kb on - strand at 127.301 kb on - strand at 127.387 kb on + strand, within H281DRAFT_03094
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 125,021 + H281DRAFT_03091 0.68 -0.4 125,265 - H281DRAFT_03091 0.77 -1.4 125,265 - H281DRAFT_03091 0.77 -0.7 125,363 + H281DRAFT_03091 0.80 -0.2 125,364 - H281DRAFT_03091 0.81 -0.4 125,408 + +0.1 125,524 - H281DRAFT_03091 0.87 +0.0 125,524 - H281DRAFT_03091 0.87 +0.0 125,575 + H281DRAFT_03091 0.89 -0.7 125,575 + H281DRAFT_03091 0.89 +0.6 125,576 - H281DRAFT_03091 0.89 +0.5 125,579 - H281DRAFT_03091 0.89 +0.4 125,617 - -0.2 125,919 - -0.9 125,924 + +0.7 125,933 + +0.7 125,934 - +2.2 125,934 - +0.1 125,998 - H281DRAFT_03092 0.14 +0.2 126,033 - H281DRAFT_03092 0.18 +1.4 126,040 + H281DRAFT_03092 0.19 +1.0 126,263 - H281DRAFT_03092 0.44 +0.1 126,374 + H281DRAFT_03092 0.56 +1.3 126,400 + H281DRAFT_03092 0.59 +0.2 127,103 + -0.5 127,271 + -0.4 127,272 - +0.3 127,272 - -0.2 127,301 - -0.3 127,387 + H281DRAFT_03094 0.12 +0.3
Or see this region's nucleotide sequence