Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03055

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03054 and H281DRAFT_03055 are separated by 103 nucleotidesH281DRAFT_03055 and H281DRAFT_03056 are separated by 397 nucleotides H281DRAFT_03054: H281DRAFT_03054 - glycogen phosphorylase, at 84,339 to 86,792 _03054 H281DRAFT_03055: H281DRAFT_03055 - hypothetical protein, at 86,896 to 87,987 _03055 H281DRAFT_03056: H281DRAFT_03056 - hypothetical protein, at 88,385 to 88,780 _03056 Position (kb) 86 87 88Strain fitness (log2 ratio) -1 0 1at 86.004 kb on + strand, within H281DRAFT_03054at 86.005 kb on - strand, within H281DRAFT_03054at 86.047 kb on - strand, within H281DRAFT_03054at 86.482 kb on - strand, within H281DRAFT_03054at 86.568 kb on - strandat 86.602 kb on - strandat 87.104 kb on - strand, within H281DRAFT_03055at 87.293 kb on + strand, within H281DRAFT_03055at 87.326 kb on - strand, within H281DRAFT_03055at 87.363 kb on - strand, within H281DRAFT_03055at 87.480 kb on - strand, within H281DRAFT_03055at 87.979 kb on + strandat 87.979 kb on + strandat 87.980 kb on - strandat 88.032 kb on - strandat 88.032 kb on - strandat 88.125 kb on + strandat 88.126 kb on - strandat 88.317 kb on + strandat 88.318 kb on - strandat 88.421 kb on - strandat 88.655 kb on + strand, within H281DRAFT_03056at 88.932 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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86,004 + H281DRAFT_03054 0.68 +0.6
86,005 - H281DRAFT_03054 0.68 -0.9
86,047 - H281DRAFT_03054 0.70 +0.2
86,482 - H281DRAFT_03054 0.87 +0.1
86,568 - -0.7
86,602 - +0.7
87,104 - H281DRAFT_03055 0.19 +0.4
87,293 + H281DRAFT_03055 0.36 +0.6
87,326 - H281DRAFT_03055 0.39 +1.3
87,363 - H281DRAFT_03055 0.43 +1.2
87,480 - H281DRAFT_03055 0.53 +0.6
87,979 + +0.4
87,979 + -0.2
87,980 - -0.0
88,032 - -0.6
88,032 - -0.3
88,125 + +0.2
88,126 - -0.0
88,317 + -0.7
88,318 - -0.9
88,421 - -0.5
88,655 + H281DRAFT_03056 0.68 -0.4
88,932 + -1.2

Or see this region's nucleotide sequence