Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02878 and H281DRAFT_02879 are separated by 9 nucleotides H281DRAFT_02879 and H281DRAFT_02880 are separated by 109 nucleotides H281DRAFT_02880 and H281DRAFT_02881 are separated by 34 nucleotides
H281DRAFT_02878: H281DRAFT_02878 - response regulator receiver sensor signal transduction histidine kinase, at 475,677 to 476,804
_02878
H281DRAFT_02879: H281DRAFT_02879 - CheB methylesterase, at 476,814 to 477,341
_02879
H281DRAFT_02880: H281DRAFT_02880 - chemotaxis protein methyltransferase CheR, at 477,451 to 478,296
_02880
H281DRAFT_02881: H281DRAFT_02881 - multi-sensor hybrid histidine kinase (EC 2.7.13.3), at 478,331 to 481,954
_02881
Position (kb) 477
478
479 Strain fitness (log2 ratio) -1
0
1
2 at 476.750 kb on + strand at 476.750 kb on + strand at 476.872 kb on + strand, within H281DRAFT_02879 at 476.873 kb on - strand, within H281DRAFT_02879 at 477.159 kb on + strand, within H281DRAFT_02879 at 477.159 kb on + strand, within H281DRAFT_02879 at 477.159 kb on + strand at 477.465 kb on - strand at 477.468 kb on + strand at 477.468 kb on + strand at 477.615 kb on - strand, within H281DRAFT_02880 at 477.747 kb on - strand, within H281DRAFT_02880 at 477.785 kb on + strand, within H281DRAFT_02880 at 478.209 kb on - strand, within H281DRAFT_02880 at 478.221 kb on + strand at 478.221 kb on + strand at 478.247 kb on - strand at 478.398 kb on + strand at 478.553 kb on + strand at 478.899 kb on + strand, within H281DRAFT_02881 at 479.212 kb on + strand, within H281DRAFT_02881 at 479.213 kb on - strand, within H281DRAFT_02881
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 476,750 + +0.0 476,750 + +0.3 476,872 + H281DRAFT_02879 0.11 -0.0 476,873 - H281DRAFT_02879 0.11 -0.9 477,159 + H281DRAFT_02879 0.65 -0.1 477,159 + H281DRAFT_02879 0.65 -0.8 477,159 + +2.2 477,465 - +0.4 477,468 + -0.1 477,468 + -0.3 477,615 - H281DRAFT_02880 0.19 +0.2 477,747 - H281DRAFT_02880 0.35 +0.1 477,785 + H281DRAFT_02880 0.39 +1.3 478,209 - H281DRAFT_02880 0.90 +0.5 478,221 + -0.1 478,221 + +0.1 478,247 - +0.3 478,398 + -0.0 478,553 + -0.1 478,899 + H281DRAFT_02881 0.16 +0.1 479,212 + H281DRAFT_02881 0.24 +0.8 479,213 - H281DRAFT_02881 0.24 +0.2
Or see this region's nucleotide sequence