Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02850 and H281DRAFT_02851 overlap by 4 nucleotides H281DRAFT_02851 and H281DRAFT_02852 are separated by 94 nucleotides H281DRAFT_02852 and H281DRAFT_02853 are separated by 659 nucleotides
H281DRAFT_02850: H281DRAFT_02850 - holin-like protein, at 443,485 to 443,856
_02850
H281DRAFT_02851: H281DRAFT_02851 - TIGR00659 family protein, at 443,853 to 444,593
_02851
H281DRAFT_02852: H281DRAFT_02852 - porin, GBP family, at 444,688 to 445,833
_02852
H281DRAFT_02853: H281DRAFT_02853 - alpha,alpha-trehalase, at 446,493 to 448,187
_02853
Position (kb) 444
445
446 Strain fitness (log2 ratio) -1
0
1 at 444.340 kb on + strand, within H281DRAFT_02851 at 444.819 kb on - strand, within H281DRAFT_02852 at 444.819 kb on - strand, within H281DRAFT_02852 at 444.872 kb on + strand, within H281DRAFT_02852 at 444.872 kb on + strand, within H281DRAFT_02852 at 444.873 kb on - strand, within H281DRAFT_02852 at 444.914 kb on + strand, within H281DRAFT_02852 at 444.951 kb on - strand, within H281DRAFT_02852 at 445.104 kb on - strand, within H281DRAFT_02852 at 445.247 kb on + strand, within H281DRAFT_02852 at 445.310 kb on + strand, within H281DRAFT_02852 at 445.312 kb on + strand, within H281DRAFT_02852 at 445.431 kb on - strand at 445.720 kb on - strand at 445.721 kb on + strand at 445.735 kb on - strand at 445.819 kb on + strand at 445.824 kb on - strand at 445.824 kb on - strand at 445.824 kb on - strand at 446.082 kb on + strand at 446.264 kb on + strand at 446.451 kb on - strand at 446.595 kb on + strand at 446.596 kb on - strand at 446.674 kb on + strand, within H281DRAFT_02853 at 446.675 kb on - strand, within H281DRAFT_02853 at 446.709 kb on + strand, within H281DRAFT_02853 at 446.815 kb on - strand, within H281DRAFT_02853 at 446.815 kb on - strand, within H281DRAFT_02853
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 444,340 + H281DRAFT_02851 0.66 -0.5 444,819 - H281DRAFT_02852 0.11 +0.4 444,819 - H281DRAFT_02852 0.11 +0.9 444,872 + H281DRAFT_02852 0.16 +0.3 444,872 + H281DRAFT_02852 0.16 +0.8 444,873 - H281DRAFT_02852 0.16 +0.1 444,914 + H281DRAFT_02852 0.20 +0.0 444,951 - H281DRAFT_02852 0.23 +0.1 445,104 - H281DRAFT_02852 0.36 +0.3 445,247 + H281DRAFT_02852 0.49 -0.0 445,310 + H281DRAFT_02852 0.54 -0.5 445,312 + H281DRAFT_02852 0.54 +0.5 445,431 - -0.3 445,720 - +0.1 445,721 + +0.2 445,735 - +0.2 445,819 + -0.7 445,824 - -0.7 445,824 - -0.1 445,824 - -0.0 446,082 + -0.5 446,264 + +0.6 446,451 - -1.2 446,595 + -1.1 446,596 - -0.3 446,674 + H281DRAFT_02853 0.11 +0.1 446,675 - H281DRAFT_02853 0.11 +0.0 446,709 + H281DRAFT_02853 0.13 +1.0 446,815 - H281DRAFT_02853 0.19 +0.2 446,815 - H281DRAFT_02853 0.19 +0.6
Or see this region's nucleotide sequence