Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02767 and H281DRAFT_02768 are separated by 22 nucleotides H281DRAFT_02768 and H281DRAFT_02769 overlap by 26 nucleotides H281DRAFT_02769 and H281DRAFT_02770 overlap by 4 nucleotides H281DRAFT_02770 and H281DRAFT_02771 are separated by 580 nucleotides
H281DRAFT_02767: H281DRAFT_02767 - Uncharacterized protein conserved in bacteria, putative lipoprotein, at 356,274 to 357,077
_02767
H281DRAFT_02768: H281DRAFT_02768 - Phage-related lysozyme (muraminidase), at 357,100 to 357,396
_02768
H281DRAFT_02769: H281DRAFT_02769 - hypothetical protein, at 357,371 to 357,778
_02769
H281DRAFT_02770: H281DRAFT_02770 - hypothetical protein, at 357,775 to 357,888
_02770
H281DRAFT_02771: H281DRAFT_02771 - Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase, at 358,469 to 360,685
_02771
Position (kb) 357
358 Strain fitness (log2 ratio) -1
0
1
2 at 356.847 kb on - strand, within H281DRAFT_02767 at 356.878 kb on + strand, within H281DRAFT_02767 at 356.998 kb on + strand at 357.000 kb on + strand at 357.019 kb on + strand at 357.066 kb on - strand at 357.084 kb on + strand at 357.087 kb on - strand at 357.116 kb on + strand at 357.214 kb on - strand, within H281DRAFT_02768 at 357.226 kb on + strand, within H281DRAFT_02768 at 357.424 kb on + strand, within H281DRAFT_02769 at 357.909 kb on + strand at 358.089 kb on - strand at 358.089 kb on - strand at 358.349 kb on + strand at 358.442 kb on + strand at 358.442 kb on + strand at 358.443 kb on - strand at 358.650 kb on - strand at 358.850 kb on + strand, within H281DRAFT_02771 at 358.881 kb on - strand, within H281DRAFT_02771
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 356,847 - H281DRAFT_02767 0.71 +1.8 356,878 + H281DRAFT_02767 0.75 +0.2 356,998 + -0.4 357,000 + +2.3 357,019 + +0.4 357,066 - -0.3 357,084 + +0.1 357,087 - -0.8 357,116 + -0.9 357,214 - H281DRAFT_02768 0.38 -0.5 357,226 + H281DRAFT_02768 0.42 -0.2 357,424 + H281DRAFT_02769 0.13 +1.1 357,909 + -0.4 358,089 - +0.3 358,089 - -1.6 358,349 + -0.2 358,442 + -0.1 358,442 + +0.4 358,443 - +0.1 358,650 - -0.6 358,850 + H281DRAFT_02771 0.17 +1.0 358,881 - H281DRAFT_02771 0.19 -0.3
Or see this region's nucleotide sequence