Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02643

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02642 and H281DRAFT_02643 are separated by 133 nucleotidesH281DRAFT_02643 and H281DRAFT_02644 are separated by 221 nucleotides H281DRAFT_02642: H281DRAFT_02642 - Glycosyl hydrolase family 63 C-terminal domain-containing protein, at 219,503 to 222,238 _02642 H281DRAFT_02643: H281DRAFT_02643 - hypothetical protein, at 222,372 to 223,052 _02643 H281DRAFT_02644: H281DRAFT_02644 - Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase, at 223,274 to 224,830 _02644 Position (kb) 222 223 224Strain fitness (log2 ratio) -2 -1 0 1at 221.624 kb on + strand, within H281DRAFT_02642at 221.681 kb on + strand, within H281DRAFT_02642at 221.727 kb on - strand, within H281DRAFT_02642at 221.840 kb on - strandat 222.133 kb on - strandat 222.299 kb on + strandat 222.353 kb on + strandat 222.353 kb on + strandat 222.832 kb on + strand, within H281DRAFT_02643at 223.047 kb on - strandat 223.052 kb on + strandat 223.121 kb on + strandat 223.121 kb on + strandat 223.121 kb on + strandat 223.122 kb on - strandat 223.122 kb on - strandat 223.124 kb on - strandat 223.124 kb on - strandat 223.962 kb on + strand, within H281DRAFT_02644at 223.962 kb on + strand, within H281DRAFT_02644at 223.987 kb on + strand, within H281DRAFT_02644

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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221,624 + H281DRAFT_02642 0.78 -0.7
221,681 + H281DRAFT_02642 0.80 +0.1
221,727 - H281DRAFT_02642 0.81 +1.0
221,840 - -0.5
222,133 - +0.9
222,299 + +0.4
222,353 + +0.8
222,353 + +0.1
222,832 + H281DRAFT_02643 0.68 +0.7
223,047 - -0.5
223,052 + +0.1
223,121 + +0.7
223,121 + -0.2
223,121 + -0.7
223,122 - +0.2
223,122 - -2.0
223,124 - -0.1
223,124 - +0.1
223,962 + H281DRAFT_02644 0.44 +1.5
223,962 + H281DRAFT_02644 0.44 +0.1
223,987 + H281DRAFT_02644 0.46 -1.1

Or see this region's nucleotide sequence