Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02602

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02601 and H281DRAFT_02602 are separated by 10 nucleotidesH281DRAFT_02602 and H281DRAFT_02603 are separated by 233 nucleotides H281DRAFT_02601: H281DRAFT_02601 - two-component system, OmpR family, sensor histidine kinase TctE, at 176,360 to 177,730 _02601 H281DRAFT_02602: H281DRAFT_02602 - DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain, at 177,741 to 178,415 _02602 H281DRAFT_02603: H281DRAFT_02603 - Outer membrane protein (porin), at 178,649 to 179,776 _02603 Position (kb) 177 178 179Strain fitness (log2 ratio) -1 0 1at 177.873 kb on + strand, within H281DRAFT_02602at 178.309 kb on + strand, within H281DRAFT_02602at 178.661 kb on + strandat 179.023 kb on + strand, within H281DRAFT_02603at 179.024 kb on - strand, within H281DRAFT_02603at 179.044 kb on + strand, within H281DRAFT_02603at 179.282 kb on - strand, within H281DRAFT_02603at 179.315 kb on - strand, within H281DRAFT_02603at 179.370 kb on - strand, within H281DRAFT_02603at 179.371 kb on + strand, within H281DRAFT_02603at 179.403 kb on - strand, within H281DRAFT_02603

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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177,873 + H281DRAFT_02602 0.20 +0.1
178,309 + H281DRAFT_02602 0.84 -0.3
178,661 + -0.4
179,023 + H281DRAFT_02603 0.33 +0.2
179,024 - H281DRAFT_02603 0.33 +0.9
179,044 + H281DRAFT_02603 0.35 +0.4
179,282 - H281DRAFT_02603 0.56 -0.0
179,315 - H281DRAFT_02603 0.59 +0.2
179,370 - H281DRAFT_02603 0.64 -0.3
179,371 + H281DRAFT_02603 0.64 -1.6
179,403 - H281DRAFT_02603 0.67 +0.2

Or see this region's nucleotide sequence