Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02418

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02416 and H281DRAFT_02417 are separated by 161 nucleotidesH281DRAFT_02417 and H281DRAFT_02418 are separated by 139 nucleotidesH281DRAFT_02418 and H281DRAFT_02419 are separated by 293 nucleotidesH281DRAFT_02419 and H281DRAFT_02420 are separated by 401 nucleotides H281DRAFT_02416: H281DRAFT_02416 - ATP-dependent DNA helicase Rep, at 587,919 to 590,027 _02416 H281DRAFT_02417: H281DRAFT_02417 - hypothetical protein, at 590,189 to 590,758 _02417 H281DRAFT_02418: H281DRAFT_02418 - Cytochrome c5, at 590,898 to 591,806 _02418 H281DRAFT_02419: H281DRAFT_02419 - tRNA_Arg_CCG, at 592,100 to 592,175 _02419 H281DRAFT_02420: H281DRAFT_02420 - cation:H+ antiporter, at 592,577 to 593,587 _02420 Position (kb) 590 591 592Strain fitness (log2 ratio) -2 -1 0 1at 590.104 kb on - strandat 590.138 kb on - strandat 590.138 kb on - strandat 590.235 kb on - strandat 590.400 kb on - strand, within H281DRAFT_02417at 590.417 kb on + strand, within H281DRAFT_02417at 590.420 kb on + strand, within H281DRAFT_02417at 590.420 kb on + strand, within H281DRAFT_02417at 590.420 kb on + strand, within H281DRAFT_02417at 590.420 kb on + strand, within H281DRAFT_02417at 590.421 kb on - strand, within H281DRAFT_02417at 590.526 kb on + strand, within H281DRAFT_02417at 590.526 kb on + strand, within H281DRAFT_02417at 590.526 kb on + strand, within H281DRAFT_02417at 590.526 kb on + strand, within H281DRAFT_02417at 590.526 kb on + strand, within H281DRAFT_02417at 590.527 kb on - strand, within H281DRAFT_02417at 590.527 kb on - strand, within H281DRAFT_02417at 590.573 kb on - strand, within H281DRAFT_02417at 590.757 kb on - strandat 590.788 kb on - strandat 590.869 kb on + strandat 590.870 kb on - strandat 590.920 kb on + strandat 590.921 kb on - strandat 590.937 kb on + strandat 591.001 kb on + strand, within H281DRAFT_02418at 591.001 kb on + strand, within H281DRAFT_02418at 591.001 kb on + strand, within H281DRAFT_02418at 591.001 kb on + strand, within H281DRAFT_02418at 591.001 kb on + strand, within H281DRAFT_02418at 591.002 kb on - strand, within H281DRAFT_02418at 591.002 kb on - strand, within H281DRAFT_02418at 591.002 kb on - strand, within H281DRAFT_02418at 591.002 kb on - strand, within H281DRAFT_02418at 591.007 kb on + strand, within H281DRAFT_02418at 591.008 kb on - strandat 591.008 kb on - strand, within H281DRAFT_02418at 591.008 kb on - strand, within H281DRAFT_02418at 591.008 kb on - strand, within H281DRAFT_02418at 591.116 kb on - strand, within H281DRAFT_02418at 591.116 kb on - strand, within H281DRAFT_02418at 591.352 kb on + strand, within H281DRAFT_02418at 591.352 kb on + strand, within H281DRAFT_02418at 591.352 kb on + strand, within H281DRAFT_02418at 591.352 kb on + strand, within H281DRAFT_02418at 591.353 kb on - strand, within H281DRAFT_02418at 591.353 kb on - strandat 591.353 kb on - strand, within H281DRAFT_02418at 591.385 kb on + strand, within H281DRAFT_02418at 591.495 kb on - strand, within H281DRAFT_02418at 591.495 kb on - strand, within H281DRAFT_02418at 591.556 kb on + strand, within H281DRAFT_02418at 591.557 kb on - strand, within H281DRAFT_02418at 591.557 kb on - strand, within H281DRAFT_02418at 591.557 kb on - strand, within H281DRAFT_02418at 591.575 kb on + strand, within H281DRAFT_02418at 591.575 kb on + strand, within H281DRAFT_02418at 591.575 kb on + strand, within H281DRAFT_02418at 591.578 kb on - strand, within H281DRAFT_02418at 591.697 kb on + strand, within H281DRAFT_02418at 591.698 kb on - strand, within H281DRAFT_02418at 591.698 kb on - strand, within H281DRAFT_02418at 591.700 kb on + strand, within H281DRAFT_02418at 591.700 kb on + strand, within H281DRAFT_02418at 591.700 kb on + strand, within H281DRAFT_02418at 591.701 kb on - strand, within H281DRAFT_02418at 591.827 kb on + strandat 591.827 kb on + strandat 591.828 kb on - strandat 591.838 kb on + strandat 591.884 kb on - strandat 591.885 kb on + strandat 591.885 kb on + strandat 591.886 kb on - strandat 591.886 kb on - strandat 591.886 kb on - strandat 592.177 kb on + strandat 592.177 kb on + strandat 592.203 kb on - strandat 592.302 kb on - strandat 592.325 kb on + strandat 592.367 kb on + strandat 592.367 kb on + strandat 592.367 kb on + strandat 592.368 kb on - strandat 592.368 kb on - strandat 592.368 kb on - strandat 592.368 kb on - strandat 592.368 kb on - strandat 592.368 kb on - strandat 592.368 kb on - strandat 592.588 kb on + strandat 592.588 kb on + strandat 592.588 kb on + strandat 592.589 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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590,104 - -0.5
590,138 - +0.1
590,138 - -0.1
590,235 - -0.1
590,400 - H281DRAFT_02417 0.37 -1.0
590,417 + H281DRAFT_02417 0.40 -0.4
590,420 + H281DRAFT_02417 0.41 -0.1
590,420 + H281DRAFT_02417 0.41 -1.2
590,420 + H281DRAFT_02417 0.41 +0.4
590,420 + H281DRAFT_02417 0.41 -0.0
590,421 - H281DRAFT_02417 0.41 +0.1
590,526 + H281DRAFT_02417 0.59 +1.1
590,526 + H281DRAFT_02417 0.59 -1.3
590,526 + H281DRAFT_02417 0.59 +0.4
590,526 + H281DRAFT_02417 0.59 +0.2
590,526 + H281DRAFT_02417 0.59 +0.2
590,527 - H281DRAFT_02417 0.59 -0.1
590,527 - H281DRAFT_02417 0.59 +0.4
590,573 - H281DRAFT_02417 0.67 -0.2
590,757 - -0.2
590,788 - -1.7
590,869 + -0.6
590,870 - -0.5
590,920 + -0.1
590,921 - +0.0
590,937 + +0.5
591,001 + H281DRAFT_02418 0.11 +0.0
591,001 + H281DRAFT_02418 0.11 -0.7
591,001 + H281DRAFT_02418 0.11 -0.2
591,001 + H281DRAFT_02418 0.11 -0.2
591,001 + H281DRAFT_02418 0.11 +0.0
591,002 - H281DRAFT_02418 0.11 +0.4
591,002 - H281DRAFT_02418 0.11 +0.4
591,002 - H281DRAFT_02418 0.11 -0.1
591,002 - H281DRAFT_02418 0.11 +0.7
591,007 + H281DRAFT_02418 0.12 -1.2
591,008 - +0.0
591,008 - H281DRAFT_02418 0.12 +0.1
591,008 - H281DRAFT_02418 0.12 -1.2
591,008 - H281DRAFT_02418 0.12 -0.4
591,116 - H281DRAFT_02418 0.24 +0.9
591,116 - H281DRAFT_02418 0.24 -0.2
591,352 + H281DRAFT_02418 0.50 +0.6
591,352 + H281DRAFT_02418 0.50 +0.2
591,352 + H281DRAFT_02418 0.50 -0.3
591,352 + H281DRAFT_02418 0.50 -0.9
591,353 - H281DRAFT_02418 0.50 +0.1
591,353 - +0.8
591,353 - H281DRAFT_02418 0.50 -0.4
591,385 + H281DRAFT_02418 0.54 +1.0
591,495 - H281DRAFT_02418 0.66 -0.0
591,495 - H281DRAFT_02418 0.66 +0.2
591,556 + H281DRAFT_02418 0.72 +0.1
591,557 - H281DRAFT_02418 0.72 -1.0
591,557 - H281DRAFT_02418 0.72 -0.2
591,557 - H281DRAFT_02418 0.72 -0.1
591,575 + H281DRAFT_02418 0.74 -0.2
591,575 + H281DRAFT_02418 0.74 -0.5
591,575 + H281DRAFT_02418 0.74 +0.1
591,578 - H281DRAFT_02418 0.75 -0.0
591,697 + H281DRAFT_02418 0.88 +0.8
591,698 - H281DRAFT_02418 0.88 +0.2
591,698 - H281DRAFT_02418 0.88 -0.7
591,700 + H281DRAFT_02418 0.88 -2.0
591,700 + H281DRAFT_02418 0.88 -0.5
591,700 + H281DRAFT_02418 0.88 -0.4
591,701 - H281DRAFT_02418 0.88 -0.2
591,827 + -0.2
591,827 + -0.1
591,828 - +0.1
591,838 + -0.4
591,884 - -0.4
591,885 + +0.2
591,885 + -0.2
591,886 - -0.8
591,886 - -0.5
591,886 - -0.3
592,177 + -1.0
592,177 + +0.3
592,203 - -0.1
592,302 - +0.2
592,325 + +0.2
592,367 + +0.2
592,367 + -0.7
592,367 + +0.5
592,368 - +0.7
592,368 - -0.2
592,368 - +0.4
592,368 - +0.3
592,368 - -0.8
592,368 - +0.2
592,368 - -0.3
592,588 + +0.5
592,588 + +0.3
592,588 + +0.1
592,589 - +0.1

Or see this region's nucleotide sequence