Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02294 and H281DRAFT_02295 are separated by 35 nucleotides H281DRAFT_02295 and H281DRAFT_02296 are separated by 44 nucleotides H281DRAFT_02296 and H281DRAFT_02297 are separated by 79 nucleotides
H281DRAFT_02294: H281DRAFT_02294 - ATP-dependent RNA helicase DbpA, at 440,150 to 441,553
_02294
H281DRAFT_02295: H281DRAFT_02295 - hypothetical protein, at 441,589 to 441,789
_02295
H281DRAFT_02296: H281DRAFT_02296 - transcriptional regulator, MerR family, at 441,834 to 442,265
_02296
H281DRAFT_02297: H281DRAFT_02297 - Cd2+/Zn2+-exporting ATPase, at 442,345 to 444,639
_02297
Position (kb) 441
442 Strain fitness (log2 ratio) -1
0
1 at 440.589 kb on - strand, within H281DRAFT_02294 at 440.597 kb on + strand, within H281DRAFT_02294 at 440.874 kb on + strand, within H281DRAFT_02294 at 440.874 kb on + strand, within H281DRAFT_02294 at 440.874 kb on + strand, within H281DRAFT_02294 at 440.896 kb on + strand, within H281DRAFT_02294 at 440.897 kb on - strand at 440.976 kb on + strand, within H281DRAFT_02294 at 441.091 kb on + strand, within H281DRAFT_02294 at 441.092 kb on - strand, within H281DRAFT_02294 at 441.092 kb on - strand, within H281DRAFT_02294 at 441.164 kb on - strand, within H281DRAFT_02294 at 441.164 kb on - strand, within H281DRAFT_02294 at 441.305 kb on + strand, within H281DRAFT_02294 at 441.305 kb on + strand, within H281DRAFT_02294 at 441.306 kb on - strand, within H281DRAFT_02294 at 441.306 kb on - strand, within H281DRAFT_02294 at 441.306 kb on - strand, within H281DRAFT_02294 at 441.320 kb on + strand, within H281DRAFT_02294 at 441.320 kb on + strand at 441.468 kb on + strand at 441.468 kb on + strand at 441.469 kb on - strand at 441.520 kb on + strand at 441.547 kb on + strand at 441.547 kb on + strand at 441.547 kb on + strand at 441.548 kb on - strand at 441.553 kb on + strand at 441.553 kb on + strand at 441.553 kb on + strand at 441.553 kb on + strand at 441.553 kb on + strand at 441.553 kb on + strand at 441.553 kb on + strand at 441.554 kb on - strand at 441.554 kb on - strand at 441.554 kb on - strand at 441.554 kb on - strand at 441.554 kb on - strand at 441.590 kb on + strand at 441.635 kb on + strand, within H281DRAFT_02295 at 441.635 kb on + strand, within H281DRAFT_02295 at 441.777 kb on + strand at 441.777 kb on + strand at 441.778 kb on - strand at 441.815 kb on - strand at 441.912 kb on + strand, within H281DRAFT_02296 at 441.912 kb on + strand, within H281DRAFT_02296 at 441.913 kb on - strand, within H281DRAFT_02296 at 441.913 kb on - strand, within H281DRAFT_02296 at 441.913 kb on - strand, within H281DRAFT_02296 at 442.004 kb on + strand, within H281DRAFT_02296 at 442.004 kb on + strand, within H281DRAFT_02296 at 442.005 kb on - strand, within H281DRAFT_02296 at 442.148 kb on + strand, within H281DRAFT_02296 at 442.150 kb on + strand, within H281DRAFT_02296 at 442.150 kb on + strand, within H281DRAFT_02296 at 442.151 kb on - strand, within H281DRAFT_02296 at 442.151 kb on - strand, within H281DRAFT_02296 at 442.191 kb on + strand, within H281DRAFT_02296 at 442.295 kb on + strand at 442.296 kb on - strand at 442.296 kb on - strand at 442.316 kb on + strand at 442.638 kb on - strand, within H281DRAFT_02297 at 442.753 kb on - strand, within H281DRAFT_02297
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 440,589 - H281DRAFT_02294 0.31 -0.7 440,597 + H281DRAFT_02294 0.32 +0.0 440,874 + H281DRAFT_02294 0.52 +0.1 440,874 + H281DRAFT_02294 0.52 +0.0 440,874 + H281DRAFT_02294 0.52 +0.4 440,896 + H281DRAFT_02294 0.53 +0.9 440,897 - -0.5 440,976 + H281DRAFT_02294 0.59 +0.2 441,091 + H281DRAFT_02294 0.67 -0.2 441,092 - H281DRAFT_02294 0.67 -0.9 441,092 - H281DRAFT_02294 0.67 -0.3 441,164 - H281DRAFT_02294 0.72 +0.4 441,164 - H281DRAFT_02294 0.72 +1.3 441,305 + H281DRAFT_02294 0.82 +0.1 441,305 + H281DRAFT_02294 0.82 +0.4 441,306 - H281DRAFT_02294 0.82 +0.0 441,306 - H281DRAFT_02294 0.82 +0.0 441,306 - H281DRAFT_02294 0.82 +0.1 441,320 + H281DRAFT_02294 0.83 -0.4 441,320 + -1.5 441,468 + +0.4 441,468 + +0.3 441,469 - -0.2 441,520 + +0.3 441,547 + +0.4 441,547 + +1.1 441,547 + -0.4 441,548 - +0.3 441,553 + -0.0 441,553 + +0.2 441,553 + -0.4 441,553 + +0.4 441,553 + -1.3 441,553 + +0.0 441,553 + +0.6 441,554 - -0.3 441,554 - -0.6 441,554 - +0.3 441,554 - +0.2 441,554 - +0.3 441,590 + -0.5 441,635 + H281DRAFT_02295 0.23 +1.1 441,635 + H281DRAFT_02295 0.23 +0.0 441,777 + -0.5 441,777 + -0.2 441,778 - +0.1 441,815 - +0.4 441,912 + H281DRAFT_02296 0.18 -0.0 441,912 + H281DRAFT_02296 0.18 -0.3 441,913 - H281DRAFT_02296 0.18 +0.0 441,913 - H281DRAFT_02296 0.18 -0.7 441,913 - H281DRAFT_02296 0.18 +0.3 442,004 + H281DRAFT_02296 0.39 +0.2 442,004 + H281DRAFT_02296 0.39 +0.1 442,005 - H281DRAFT_02296 0.40 -0.0 442,148 + H281DRAFT_02296 0.73 -0.3 442,150 + H281DRAFT_02296 0.73 -0.2 442,150 + H281DRAFT_02296 0.73 +0.5 442,151 - H281DRAFT_02296 0.73 +0.4 442,151 - H281DRAFT_02296 0.73 +0.2 442,191 + H281DRAFT_02296 0.83 +0.6 442,295 + +0.2 442,296 - +0.3 442,296 - +0.4 442,316 + -0.3 442,638 - H281DRAFT_02297 0.13 +0.2 442,753 - H281DRAFT_02297 0.18 -0.9
Or see this region's nucleotide sequence