Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01877 and H281DRAFT_01878 are separated by 12 nucleotides H281DRAFT_01878 and H281DRAFT_01879 are separated by 148 nucleotides H281DRAFT_01879 and H281DRAFT_01880 are separated by 263 nucleotides
H281DRAFT_01877: H281DRAFT_01877 - multidrug efflux pump, at 791,746 to 794,973
_01877
H281DRAFT_01878: H281DRAFT_01878 - membrane fusion protein, multidrug efflux system, at 794,986 to 796,419
_01878
H281DRAFT_01879: H281DRAFT_01879 - Response regulator, at 796,568 to 796,954
_01879
H281DRAFT_01880: H281DRAFT_01880 - two component transcriptional regulator, LuxR family, at 797,218 to 797,877
_01880
Position (kb) 794
795
796
797 Strain fitness (log2 ratio) -1
0
1 at 794.420 kb on + strand, within H281DRAFT_01877 at 794.487 kb on - strand, within H281DRAFT_01877 at 794.487 kb on - strand, within H281DRAFT_01877 at 794.510 kb on + strand, within H281DRAFT_01877 at 794.839 kb on - strand at 794.910 kb on + strand at 794.911 kb on - strand at 795.231 kb on + strand, within H281DRAFT_01878 at 795.642 kb on - strand, within H281DRAFT_01878 at 795.867 kb on - strand, within H281DRAFT_01878
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 794,420 + H281DRAFT_01877 0.83 +0.0 794,487 - H281DRAFT_01877 0.85 -0.1 794,487 - H281DRAFT_01877 0.85 +0.2 794,510 + H281DRAFT_01877 0.86 -1.4 794,839 - -0.2 794,910 + -0.2 794,911 - +0.2 795,231 + H281DRAFT_01878 0.17 +0.9 795,642 - H281DRAFT_01878 0.46 +0.7 795,867 - H281DRAFT_01878 0.61 +0.1
Or see this region's nucleotide sequence