Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01578 and H281DRAFT_01579 are separated by 13 nucleotides H281DRAFT_01579 and H281DRAFT_01580 are separated by 149 nucleotides H281DRAFT_01580 and H281DRAFT_01581 are separated by 142 nucleotides
H281DRAFT_01578: H281DRAFT_01578 - beta-alanine--pyruvate transaminase, at 454,522 to 455,850
_01578
H281DRAFT_01579: H281DRAFT_01579 - hypothetical protein, at 455,864 to 456,388
_01579
H281DRAFT_01580: H281DRAFT_01580 - hypothetical protein, at 456,538 to 456,789
_01580
H281DRAFT_01581: H281DRAFT_01581 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 456,932 to 458,140
_01581
Position (kb) 456
457 Strain fitness (log2 ratio) -2
-1
0
1
2 at 455.702 kb on - strand, within H281DRAFT_01578 at 455.831 kb on + strand at 456.599 kb on - strand, within H281DRAFT_01580 at 456.748 kb on + strand, within H281DRAFT_01580 at 457.051 kb on - strand at 457.090 kb on + strand, within H281DRAFT_01581 at 457.091 kb on - strand, within H281DRAFT_01581 at 457.239 kb on + strand, within H281DRAFT_01581 at 457.240 kb on - strand, within H281DRAFT_01581 at 457.252 kb on - strand, within H281DRAFT_01581 at 457.354 kb on - strand, within H281DRAFT_01581 at 457.354 kb on - strand, within H281DRAFT_01581 at 457.411 kb on + strand, within H281DRAFT_01581 at 457.412 kb on - strand, within H281DRAFT_01581 at 457.617 kb on + strand, within H281DRAFT_01581 at 457.691 kb on - strand, within H281DRAFT_01581 at 457.691 kb on - strand, within H281DRAFT_01581 at 457.692 kb on + strand, within H281DRAFT_01581 at 457.692 kb on + strand, within H281DRAFT_01581 at 457.693 kb on - strand, within H281DRAFT_01581 at 457.693 kb on - strand, within H281DRAFT_01581 at 457.718 kb on - strand, within H281DRAFT_01581 at 457.720 kb on - strand, within H281DRAFT_01581
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 455,702 - H281DRAFT_01578 0.89 -0.3 455,831 + +0.5 456,599 - H281DRAFT_01580 0.24 +0.1 456,748 + H281DRAFT_01580 0.83 +0.9 457,051 - -0.1 457,090 + H281DRAFT_01581 0.13 +0.2 457,091 - H281DRAFT_01581 0.13 +0.1 457,239 + H281DRAFT_01581 0.25 -1.9 457,240 - H281DRAFT_01581 0.25 +1.9 457,252 - H281DRAFT_01581 0.26 -0.2 457,354 - H281DRAFT_01581 0.35 +0.8 457,354 - H281DRAFT_01581 0.35 -0.0 457,411 + H281DRAFT_01581 0.40 +0.8 457,412 - H281DRAFT_01581 0.40 +0.5 457,617 + H281DRAFT_01581 0.57 +0.2 457,691 - H281DRAFT_01581 0.63 +0.9 457,691 - H281DRAFT_01581 0.63 +0.2 457,692 + H281DRAFT_01581 0.63 -0.1 457,692 + H281DRAFT_01581 0.63 -0.3 457,693 - H281DRAFT_01581 0.63 +0.3 457,693 - H281DRAFT_01581 0.63 +0.1 457,718 - H281DRAFT_01581 0.65 -1.1 457,720 - H281DRAFT_01581 0.65 +0.3
Or see this region's nucleotide sequence