Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01338 and H281DRAFT_01339 are separated by 179 nucleotides H281DRAFT_01339 and H281DRAFT_01340 overlap by 4 nucleotides H281DRAFT_01340 and H281DRAFT_01341 are separated by 223 nucleotides H281DRAFT_01341 and H281DRAFT_01342 are separated by 46 nucleotides
H281DRAFT_01338: H281DRAFT_01338 - outer membrane transport energization protein ExbB, at 180,223 to 180,939
_01338
H281DRAFT_01339: H281DRAFT_01339 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED, at 181,119 to 181,889
_01339
H281DRAFT_01340: H281DRAFT_01340 - phosphoglycolate phosphatase, at 181,886 to 182,578
_01340
H281DRAFT_01341: H281DRAFT_01341 - Protein of unknown function (DUF1488), at 182,802 to 183,080
_01341
H281DRAFT_01342: H281DRAFT_01342 - ABC-type phosphate/phosphonate transport system, substrate-binding protein, at 183,127 to 183,918
_01342
Position (kb) 181
182
183 Strain fitness (log2 ratio) -1
0
1 at 180.904 kb on + strand at 181.709 kb on - strand, within H281DRAFT_01339 at 181.722 kb on + strand, within H281DRAFT_01339 at 182.115 kb on + strand, within H281DRAFT_01340 at 182.115 kb on + strand, within H281DRAFT_01340 at 182.119 kb on + strand, within H281DRAFT_01340 at 182.120 kb on - strand, within H281DRAFT_01340 at 182.120 kb on - strand at 182.154 kb on - strand, within H281DRAFT_01340 at 182.394 kb on + strand, within H281DRAFT_01340 at 182.462 kb on - strand, within H281DRAFT_01340 at 182.483 kb on + strand, within H281DRAFT_01340 at 182.489 kb on + strand, within H281DRAFT_01340 at 182.632 kb on - strand at 182.811 kb on + strand at 182.811 kb on + strand at 183.081 kb on + strand at 183.081 kb on + strand at 183.094 kb on + strand at 183.095 kb on - strand at 183.106 kb on + strand at 183.154 kb on + strand at 183.154 kb on + strand at 183.466 kb on + strand, within H281DRAFT_01342 at 183.503 kb on + strand, within H281DRAFT_01342
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 180,904 + +0.1 181,709 - H281DRAFT_01339 0.77 -0.8 181,722 + H281DRAFT_01339 0.78 -0.3 182,115 + H281DRAFT_01340 0.33 +0.1 182,115 + H281DRAFT_01340 0.33 +0.2 182,119 + H281DRAFT_01340 0.34 +0.3 182,120 - H281DRAFT_01340 0.34 -0.0 182,120 - -0.8 182,154 - H281DRAFT_01340 0.39 +0.3 182,394 + H281DRAFT_01340 0.73 -0.3 182,462 - H281DRAFT_01340 0.83 -0.0 182,483 + H281DRAFT_01340 0.86 +0.3 182,489 + H281DRAFT_01340 0.87 +0.4 182,632 - +0.3 182,811 + +0.1 182,811 + +1.5 183,081 + +0.1 183,081 + -0.1 183,094 + -1.0 183,095 - -0.3 183,106 + -0.6 183,154 + -0.3 183,154 + -1.6 183,466 + H281DRAFT_01342 0.43 -0.6 183,503 + H281DRAFT_01342 0.47 -0.1
Or see this region's nucleotide sequence