Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01336

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01335 and H281DRAFT_01336 are separated by 204 nucleotidesH281DRAFT_01336 and H281DRAFT_01337 are separated by 74 nucleotides H281DRAFT_01335: H281DRAFT_01335 - Signal transduction histidine kinase, at 175,175 to 176,197 _01335 H281DRAFT_01336: H281DRAFT_01336 - Outer membrane receptor proteins, mostly Fe transport, at 176,402 to 178,765 _01336 H281DRAFT_01337: H281DRAFT_01337 - 40-residue YVTN family beta-propeller repeat-containing protein, at 178,840 to 179,961 _01337 Position (kb) 176 177 178 179Strain fitness (log2 ratio) -1 0 1at 175.553 kb on + strand, within H281DRAFT_01335at 175.554 kb on - strand, within H281DRAFT_01335at 175.554 kb on - strand, within H281DRAFT_01335at 175.797 kb on + strand, within H281DRAFT_01335at 176.975 kb on + strand, within H281DRAFT_01336at 176.976 kb on - strand, within H281DRAFT_01336at 176.976 kb on - strand, within H281DRAFT_01336at 177.125 kb on + strand, within H281DRAFT_01336at 177.129 kb on - strand, within H281DRAFT_01336at 177.213 kb on - strand, within H281DRAFT_01336at 177.215 kb on - strand, within H281DRAFT_01336at 177.380 kb on + strand, within H281DRAFT_01336at 177.753 kb on - strand, within H281DRAFT_01336at 177.810 kb on - strand, within H281DRAFT_01336at 177.874 kb on + strand, within H281DRAFT_01336at 177.874 kb on + strand, within H281DRAFT_01336at 177.875 kb on - strand, within H281DRAFT_01336at 177.875 kb on - strand, within H281DRAFT_01336at 177.875 kb on - strand, within H281DRAFT_01336at 177.875 kb on - strand, within H281DRAFT_01336at 177.948 kb on - strandat 178.129 kb on + strand, within H281DRAFT_01336at 178.130 kb on - strand, within H281DRAFT_01336at 178.130 kb on - strand, within H281DRAFT_01336at 178.153 kb on - strand, within H281DRAFT_01336at 178.153 kb on - strand, within H281DRAFT_01336at 178.153 kb on - strand, within H281DRAFT_01336at 178.153 kb on - strand, within H281DRAFT_01336at 178.254 kb on + strand, within H281DRAFT_01336at 178.280 kb on + strand, within H281DRAFT_01336at 178.280 kb on + strand, within H281DRAFT_01336at 178.286 kb on + strandat 178.287 kb on - strand, within H281DRAFT_01336at 178.287 kb on - strand, within H281DRAFT_01336at 178.484 kb on + strand, within H281DRAFT_01336at 178.485 kb on - strand, within H281DRAFT_01336at 178.485 kb on - strand, within H281DRAFT_01336at 178.673 kb on - strandat 178.785 kb on + strandat 178.786 kb on - strandat 178.950 kb on - strandat 179.054 kb on + strand, within H281DRAFT_01337at 179.129 kb on + strand, within H281DRAFT_01337at 179.157 kb on + strand, within H281DRAFT_01337at 179.234 kb on + strand, within H281DRAFT_01337at 179.235 kb on - strand, within H281DRAFT_01337at 179.585 kb on + strand, within H281DRAFT_01337at 179.585 kb on + strand, within H281DRAFT_01337at 179.585 kb on + strand, within H281DRAFT_01337at 179.594 kb on + strand, within H281DRAFT_01337

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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175,553 + H281DRAFT_01335 0.37 -0.5
175,554 - H281DRAFT_01335 0.37 -0.0
175,554 - H281DRAFT_01335 0.37 -0.2
175,797 + H281DRAFT_01335 0.61 -0.6
176,975 + H281DRAFT_01336 0.24 -0.4
176,976 - H281DRAFT_01336 0.24 +0.1
176,976 - H281DRAFT_01336 0.24 +0.5
177,125 + H281DRAFT_01336 0.31 -0.1
177,129 - H281DRAFT_01336 0.31 +0.1
177,213 - H281DRAFT_01336 0.34 +0.4
177,215 - H281DRAFT_01336 0.34 +0.3
177,380 + H281DRAFT_01336 0.41 +0.6
177,753 - H281DRAFT_01336 0.57 -0.5
177,810 - H281DRAFT_01336 0.60 -0.1
177,874 + H281DRAFT_01336 0.62 -0.4
177,874 + H281DRAFT_01336 0.62 +0.2
177,875 - H281DRAFT_01336 0.62 +0.2
177,875 - H281DRAFT_01336 0.62 +0.0
177,875 - H281DRAFT_01336 0.62 -0.3
177,875 - H281DRAFT_01336 0.62 +0.9
177,948 - +1.0
178,129 + H281DRAFT_01336 0.73 +0.1
178,130 - H281DRAFT_01336 0.73 +0.2
178,130 - H281DRAFT_01336 0.73 +0.0
178,153 - H281DRAFT_01336 0.74 -0.4
178,153 - H281DRAFT_01336 0.74 -0.0
178,153 - H281DRAFT_01336 0.74 -0.0
178,153 - H281DRAFT_01336 0.74 -0.0
178,254 + H281DRAFT_01336 0.78 -0.6
178,280 + H281DRAFT_01336 0.79 -0.3
178,280 + H281DRAFT_01336 0.79 +0.3
178,286 + -0.5
178,287 - H281DRAFT_01336 0.80 -0.6
178,287 - H281DRAFT_01336 0.80 +1.0
178,484 + H281DRAFT_01336 0.88 -0.3
178,485 - H281DRAFT_01336 0.88 +0.2
178,485 - H281DRAFT_01336 0.88 -1.3
178,673 - -0.5
178,785 + -0.4
178,786 - -0.1
178,950 - +0.1
179,054 + H281DRAFT_01337 0.19 -0.2
179,129 + H281DRAFT_01337 0.26 +0.9
179,157 + H281DRAFT_01337 0.28 -0.1
179,234 + H281DRAFT_01337 0.35 -0.7
179,235 - H281DRAFT_01337 0.35 -0.8
179,585 + H281DRAFT_01337 0.66 -0.8
179,585 + H281DRAFT_01337 0.66 -0.4
179,585 + H281DRAFT_01337 0.66 +1.3
179,594 + H281DRAFT_01337 0.67 +0.2

Or see this region's nucleotide sequence