Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01329 and H281DRAFT_01330 overlap by 4 nucleotides H281DRAFT_01330 and H281DRAFT_01331 are separated by 43 nucleotides H281DRAFT_01331 and H281DRAFT_01332 overlap by 4 nucleotides H281DRAFT_01332 and H281DRAFT_01333 are separated by 4 nucleotides
H281DRAFT_01329: H281DRAFT_01329 - prolyl aminopeptidase (EC:3.4.11.5). Serine peptidase. MEROPS family S33, at 170,239 to 171,273
_01329
H281DRAFT_01330: H281DRAFT_01330 - pyrroloquinoline quinone biosynthesis protein B, at 171,270 to 172,190
_01330
H281DRAFT_01331: H281DRAFT_01331 - pyrroloquinoline-quinone synthase, at 172,234 to 172,986
_01331
H281DRAFT_01332: H281DRAFT_01332 - pyrroloquinoline quinone biosynthesis protein D, at 172,983 to 173,252
_01332
H281DRAFT_01333: H281DRAFT_01333 - pyrroloquinoline quinone biosynthesis protein E, at 173,257 to 174,459
_01333
Position (kb) 172
173 Strain fitness (log2 ratio) -1
0
1 at 171.237 kb on + strand at 171.238 kb on - strand at 171.284 kb on - strand at 171.597 kb on + strand, within H281DRAFT_01330 at 171.598 kb on - strand, within H281DRAFT_01330 at 171.774 kb on + strand at 171.858 kb on + strand, within H281DRAFT_01330 at 171.995 kb on + strand, within H281DRAFT_01330 at 172.075 kb on + strand, within H281DRAFT_01330 at 172.076 kb on - strand at 172.134 kb on - strand at 172.186 kb on + strand at 172.358 kb on - strand, within H281DRAFT_01331 at 172.447 kb on + strand, within H281DRAFT_01331 at 172.940 kb on + strand at 172.940 kb on + strand at 172.940 kb on + strand at 172.941 kb on - strand at 173.351 kb on - strand at 173.351 kb on - strand at 173.395 kb on + strand, within H281DRAFT_01333 at 173.396 kb on - strand, within H281DRAFT_01333 at 173.773 kb on + strand, within H281DRAFT_01333 at 173.830 kb on + strand, within H281DRAFT_01333 at 173.854 kb on + strand, within H281DRAFT_01333 at 173.858 kb on - strand, within H281DRAFT_01333 at 173.858 kb on - strand, within H281DRAFT_01333
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 171,237 + -0.0 171,238 - +0.5 171,284 - +0.0 171,597 + H281DRAFT_01330 0.36 -0.1 171,598 - H281DRAFT_01330 0.36 +0.2 171,774 + +1.0 171,858 + H281DRAFT_01330 0.64 -1.6 171,995 + H281DRAFT_01330 0.79 +0.1 172,075 + H281DRAFT_01330 0.87 +0.5 172,076 - -0.6 172,134 - -0.0 172,186 + -1.2 172,358 - H281DRAFT_01331 0.16 +1.0 172,447 + H281DRAFT_01331 0.28 +0.2 172,940 + -0.0 172,940 + -0.0 172,940 + +0.2 172,941 - -0.2 173,351 - -0.1 173,351 - +0.2 173,395 + H281DRAFT_01333 0.11 -0.6 173,396 - H281DRAFT_01333 0.12 +0.2 173,773 + H281DRAFT_01333 0.43 +0.5 173,830 + H281DRAFT_01333 0.48 -0.2 173,854 + H281DRAFT_01333 0.50 -0.4 173,858 - H281DRAFT_01333 0.50 +0.3 173,858 - H281DRAFT_01333 0.50 +0.5
Or see this region's nucleotide sequence