Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01309 and H281DRAFT_01310 are separated by 19 nucleotides H281DRAFT_01310 and H281DRAFT_01311 are separated by 14 nucleotides H281DRAFT_01311 and H281DRAFT_01312 are separated by 32 nucleotides
H281DRAFT_01309: H281DRAFT_01309 - dihydropteroate synthase-related protein, at 147,825 to 149,207
_01309
H281DRAFT_01310: H281DRAFT_01310 - ribulose-5-phosphate 3-epimerase (EC 5.1.3.1), at 149,227 to 149,937
_01310
H281DRAFT_01311: H281DRAFT_01311 - fructose-bisphosphate aldolase, at 149,952 to 150,989
_01311
H281DRAFT_01312: H281DRAFT_01312 - transketolase, at 151,022 to 153,082
_01312
Position (kb) 149
150
151 Strain fitness (log2 ratio) -1
0
1 at 149.814 kb on - strand, within H281DRAFT_01310 at 149.827 kb on + strand, within H281DRAFT_01310 at 149.828 kb on - strand, within H281DRAFT_01310 at 150.360 kb on - strand, within H281DRAFT_01311 at 150.808 kb on + strand, within H281DRAFT_01311 at 150.964 kb on - strand at 151.161 kb on + strand at 151.162 kb on - strand at 151.162 kb on - strand at 151.836 kb on + strand, within H281DRAFT_01312 at 151.837 kb on - strand, within H281DRAFT_01312
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 149,814 - H281DRAFT_01310 0.83 +0.7 149,827 + H281DRAFT_01310 0.84 +0.2 149,828 - H281DRAFT_01310 0.85 +0.6 150,360 - H281DRAFT_01311 0.39 +1.5 150,808 + H281DRAFT_01311 0.82 +0.8 150,964 - +0.5 151,161 + +0.2 151,162 - -0.3 151,162 - -1.0 151,836 + H281DRAFT_01312 0.39 -0.1 151,837 - H281DRAFT_01312 0.40 +0.3
Or see this region's nucleotide sequence