Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01293 and H281DRAFT_01294 overlap by 4 nucleotides H281DRAFT_01294 and H281DRAFT_01295 are separated by 30 nucleotides H281DRAFT_01295 and H281DRAFT_01296 are separated by 236 nucleotides
H281DRAFT_01293: H281DRAFT_01293 - hypothetical protein, at 131,016 to 131,825
_01293
H281DRAFT_01294: H281DRAFT_01294 - amino acid ABC transporter substrate-binding protein, PAAT family, at 131,822 to 132,736
_01294
H281DRAFT_01295: H281DRAFT_01295 - Cytochrome C oxidase, cbb3-type, subunit III, at 132,767 to 133,186
_01295
H281DRAFT_01296: H281DRAFT_01296 - PQQ-dependent dehydrogenase, methanol/ethanol family, at 133,423 to 135,240
_01296
Position (kb) 132
133
134 Strain fitness (log2 ratio) -1
0
1 at 131.887 kb on - strand at 132.295 kb on + strand, within H281DRAFT_01294 at 132.339 kb on + strand, within H281DRAFT_01294 at 132.417 kb on + strand, within H281DRAFT_01294 at 132.679 kb on - strand at 133.049 kb on - strand, within H281DRAFT_01295 at 133.083 kb on + strand, within H281DRAFT_01295 at 133.120 kb on - strand, within H281DRAFT_01295 at 133.278 kb on - strand at 133.288 kb on + strand at 133.289 kb on - strand at 133.310 kb on + strand at 133.613 kb on + strand, within H281DRAFT_01296 at 133.715 kb on + strand, within H281DRAFT_01296 at 133.917 kb on - strand, within H281DRAFT_01296
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 131,887 - -0.0 132,295 + H281DRAFT_01294 0.52 -0.1 132,339 + H281DRAFT_01294 0.57 +0.2 132,417 + H281DRAFT_01294 0.65 -0.2 132,679 - +0.2 133,049 - H281DRAFT_01295 0.67 +0.6 133,083 + H281DRAFT_01295 0.75 +0.3 133,120 - H281DRAFT_01295 0.84 +0.6 133,278 - -0.7 133,288 + +0.2 133,289 - +0.1 133,310 + +0.5 133,613 + H281DRAFT_01296 0.10 -0.1 133,715 + H281DRAFT_01296 0.16 +0.5 133,917 - H281DRAFT_01296 0.27 +0.3
Or see this region's nucleotide sequence