Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01281 and H281DRAFT_01282 are separated by 105 nucleotides H281DRAFT_01282 and H281DRAFT_01283 are separated by 68 nucleotides
H281DRAFT_01281: H281DRAFT_01281 - Glycosyltransferases involved in cell wall biogenesis, at 119,184 to 120,185
_01281
H281DRAFT_01282: H281DRAFT_01282 - Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains, at 120,291 to 121,514
_01282
H281DRAFT_01283: H281DRAFT_01283 - Pimeloyl-ACP methyl ester carboxylesterase, at 121,583 to 122,434
_01283
Position (kb) 120
121
122 Strain fitness (log2 ratio) -1
0
1 at 119.384 kb on - strand, within H281DRAFT_01281 at 119.391 kb on + strand, within H281DRAFT_01281 at 119.391 kb on + strand, within H281DRAFT_01281 at 119.393 kb on + strand, within H281DRAFT_01281 at 119.393 kb on + strand, within H281DRAFT_01281 at 119.394 kb on - strand, within H281DRAFT_01281 at 119.394 kb on - strand, within H281DRAFT_01281 at 119.414 kb on - strand, within H281DRAFT_01281 at 119.565 kb on + strand, within H281DRAFT_01281 at 119.565 kb on + strand, within H281DRAFT_01281 at 119.565 kb on + strand, within H281DRAFT_01281 at 119.565 kb on + strand, within H281DRAFT_01281 at 119.566 kb on - strand, within H281DRAFT_01281 at 119.566 kb on - strand, within H281DRAFT_01281 at 119.566 kb on - strand, within H281DRAFT_01281 at 119.566 kb on - strand, within H281DRAFT_01281 at 119.570 kb on - strand, within H281DRAFT_01281 at 119.625 kb on + strand, within H281DRAFT_01281 at 119.625 kb on + strand, within H281DRAFT_01281 at 119.626 kb on - strand, within H281DRAFT_01281 at 119.680 kb on + strand, within H281DRAFT_01281 at 119.681 kb on - strand, within H281DRAFT_01281 at 120.033 kb on + strand, within H281DRAFT_01281 at 120.150 kb on + strand at 120.339 kb on + strand at 120.379 kb on - strand at 120.566 kb on - strand, within H281DRAFT_01282 at 120.674 kb on + strand, within H281DRAFT_01282 at 120.973 kb on - strand, within H281DRAFT_01282 at 121.290 kb on - strand, within H281DRAFT_01282 at 121.365 kb on - strand, within H281DRAFT_01282 at 121.384 kb on - strand, within H281DRAFT_01282 at 121.572 kb on + strand at 121.680 kb on + strand, within H281DRAFT_01283 at 121.863 kb on - strand, within H281DRAFT_01283 at 121.865 kb on - strand, within H281DRAFT_01283 at 121.865 kb on - strand, within H281DRAFT_01283 at 121.943 kb on + strand, within H281DRAFT_01283 at 121.944 kb on - strand, within H281DRAFT_01283 at 122.352 kb on + strand at 122.352 kb on + strand at 122.391 kb on - strand at 122.434 kb on + strand at 122.435 kb on - strand at 122.435 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 119,384 - H281DRAFT_01281 0.20 +0.2 119,391 + H281DRAFT_01281 0.21 +0.5 119,391 + H281DRAFT_01281 0.21 +0.2 119,393 + H281DRAFT_01281 0.21 -0.3 119,393 + H281DRAFT_01281 0.21 -0.2 119,394 - H281DRAFT_01281 0.21 +0.1 119,394 - H281DRAFT_01281 0.21 +0.1 119,414 - H281DRAFT_01281 0.23 -0.4 119,565 + H281DRAFT_01281 0.38 +0.2 119,565 + H281DRAFT_01281 0.38 +0.1 119,565 + H281DRAFT_01281 0.38 -0.1 119,565 + H281DRAFT_01281 0.38 -0.4 119,566 - H281DRAFT_01281 0.38 +0.2 119,566 - H281DRAFT_01281 0.38 +0.2 119,566 - H281DRAFT_01281 0.38 -0.0 119,566 - H281DRAFT_01281 0.38 -0.4 119,570 - H281DRAFT_01281 0.39 -0.2 119,625 + H281DRAFT_01281 0.44 +0.0 119,625 + H281DRAFT_01281 0.44 +0.5 119,626 - H281DRAFT_01281 0.44 +0.6 119,680 + H281DRAFT_01281 0.50 +0.3 119,681 - H281DRAFT_01281 0.50 +0.2 120,033 + H281DRAFT_01281 0.85 -0.0 120,150 + +0.5 120,339 + -0.4 120,379 - +0.1 120,566 - H281DRAFT_01282 0.22 +0.9 120,674 + H281DRAFT_01282 0.31 +0.3 120,973 - H281DRAFT_01282 0.56 +0.4 121,290 - H281DRAFT_01282 0.82 +0.3 121,365 - H281DRAFT_01282 0.88 +0.3 121,384 - H281DRAFT_01282 0.89 +0.7 121,572 + -0.2 121,680 + H281DRAFT_01283 0.11 +1.1 121,863 - H281DRAFT_01283 0.33 -0.3 121,865 - H281DRAFT_01283 0.33 +0.1 121,865 - H281DRAFT_01283 0.33 -1.1 121,943 + H281DRAFT_01283 0.42 -0.6 121,944 - H281DRAFT_01283 0.42 -0.0 122,352 + -0.3 122,352 + -1.4 122,391 - +0.2 122,434 + -1.5 122,435 - +0.3 122,435 - -0.1
Or see this region's nucleotide sequence