Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00973

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00972 and H281DRAFT_00973 are separated by 160 nucleotidesH281DRAFT_00973 and H281DRAFT_00974 are separated by 0 nucleotides H281DRAFT_00972: H281DRAFT_00972 - lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase, at 1,088,870 to 1,090,315 _00972 H281DRAFT_00973: H281DRAFT_00973 - Sugar phosphate permease, at 1,090,476 to 1,091,840 _00973 H281DRAFT_00974: H281DRAFT_00974 - L-alanine-DL-glutamate epimerase, at 1,091,841 to 1,093,058 _00974 Position (kb) 1090 1091 1092Strain fitness (log2 ratio) -1 0 1at 1089.743 kb on + strand, within H281DRAFT_00972at 1090.122 kb on - strand, within H281DRAFT_00972at 1090.123 kb on + strand, within H281DRAFT_00972at 1090.181 kb on + strandat 1090.346 kb on - strandat 1090.662 kb on + strand, within H281DRAFT_00973at 1091.110 kb on - strand, within H281DRAFT_00973at 1091.365 kb on + strand, within H281DRAFT_00973at 1091.665 kb on + strand, within H281DRAFT_00973at 1091.709 kb on + strandat 1091.734 kb on + strandat 1091.760 kb on + strandat 1091.838 kb on + strandat 1091.839 kb on - strandat 1091.905 kb on - strandat 1092.087 kb on - strand, within H281DRAFT_00974at 1092.228 kb on + strand, within H281DRAFT_00974at 1092.229 kb on - strand, within H281DRAFT_00974at 1092.229 kb on - strand, within H281DRAFT_00974at 1092.229 kb on - strand, within H281DRAFT_00974at 1092.265 kb on - strand, within H281DRAFT_00974at 1092.352 kb on - strand, within H281DRAFT_00974at 1092.745 kb on - strand, within H281DRAFT_00974at 1092.772 kb on - strand, within H281DRAFT_00974

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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1,089,743 + H281DRAFT_00972 0.60 +0.2
1,090,122 - H281DRAFT_00972 0.87 +0.6
1,090,123 + H281DRAFT_00972 0.87 -0.7
1,090,181 + +0.2
1,090,346 - +1.2
1,090,662 + H281DRAFT_00973 0.14 +0.4
1,091,110 - H281DRAFT_00973 0.46 +0.6
1,091,365 + H281DRAFT_00973 0.65 +0.4
1,091,665 + H281DRAFT_00973 0.87 +0.3
1,091,709 + +0.2
1,091,734 + +0.1
1,091,760 + +0.3
1,091,838 + +0.4
1,091,839 - -0.4
1,091,905 - +0.8
1,092,087 - H281DRAFT_00974 0.20 +0.4
1,092,228 + H281DRAFT_00974 0.32 +1.3
1,092,229 - H281DRAFT_00974 0.32 +0.3
1,092,229 - H281DRAFT_00974 0.32 +0.5
1,092,229 - H281DRAFT_00974 0.32 +0.1
1,092,265 - H281DRAFT_00974 0.35 +0.5
1,092,352 - H281DRAFT_00974 0.42 +0.8
1,092,745 - H281DRAFT_00974 0.74 +0.4
1,092,772 - H281DRAFT_00974 0.76 +0.3

Or see this region's nucleotide sequence