Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00883 and H281DRAFT_00884 are separated by 74 nucleotides H281DRAFT_00884 and H281DRAFT_00885 are separated by 220 nucleotides H281DRAFT_00885 and H281DRAFT_00886 are separated by 47 nucleotides
H281DRAFT_00883: H281DRAFT_00883 - alkyl hydroperoxide reductase subunit D, at 979,182 to 979,700
_00883
H281DRAFT_00884: H281DRAFT_00884 - peroxiredoxin (alkyl hydroperoxide reductase subunit C), at 979,775 to 980,323
_00884
H281DRAFT_00885: H281DRAFT_00885 - two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ, at 980,544 to 981,893
_00885
H281DRAFT_00886: H281DRAFT_00886 - two component transcriptional regulator, winged helix family, at 981,941 to 982,675
_00886
Position (kb) 980
981
982 Strain fitness (log2 ratio) -1
0
1 at 979.548 kb on + strand, within H281DRAFT_00883 at 979.549 kb on - strand, within H281DRAFT_00883 at 979.776 kb on + strand at 979.776 kb on + strand at 979.777 kb on - strand at 980.010 kb on + strand, within H281DRAFT_00884 at 980.011 kb on - strand, within H281DRAFT_00884 at 980.035 kb on + strand, within H281DRAFT_00884 at 980.035 kb on + strand, within H281DRAFT_00884 at 980.035 kb on + strand, within H281DRAFT_00884 at 980.036 kb on - strand, within H281DRAFT_00884 at 980.088 kb on - strand, within H281DRAFT_00884 at 980.088 kb on - strand, within H281DRAFT_00884 at 980.179 kb on - strand, within H281DRAFT_00884 at 980.184 kb on + strand, within H281DRAFT_00884 at 980.184 kb on + strand, within H281DRAFT_00884 at 980.184 kb on + strand, within H281DRAFT_00884 at 980.185 kb on - strand, within H281DRAFT_00884 at 980.185 kb on - strand, within H281DRAFT_00884 at 980.185 kb on - strand, within H281DRAFT_00884 at 980.185 kb on - strand, within H281DRAFT_00884 at 980.408 kb on - strand at 980.459 kb on + strand at 980.459 kb on + strand at 980.459 kb on + strand at 980.459 kb on + strand at 980.459 kb on + strand at 980.459 kb on + strand at 980.460 kb on - strand at 980.460 kb on - strand at 980.708 kb on - strand, within H281DRAFT_00885 at 981.356 kb on + strand, within H281DRAFT_00885 at 981.357 kb on - strand, within H281DRAFT_00885 at 981.464 kb on - strand, within H281DRAFT_00885 at 981.604 kb on + strand, within H281DRAFT_00885 at 981.604 kb on + strand, within H281DRAFT_00885 at 981.604 kb on + strand, within H281DRAFT_00885 at 981.604 kb on + strand, within H281DRAFT_00885 at 981.605 kb on - strand, within H281DRAFT_00885 at 981.605 kb on - strand, within H281DRAFT_00885 at 981.695 kb on - strand, within H281DRAFT_00885 at 981.908 kb on - strand at 981.908 kb on - strand at 981.908 kb on - strand at 981.970 kb on - strand at 981.970 kb on - strand at 982.077 kb on + strand, within H281DRAFT_00886 at 982.356 kb on + strand, within H281DRAFT_00886 at 982.356 kb on + strand at 982.357 kb on - strand, within H281DRAFT_00886 at 982.566 kb on + strand, within H281DRAFT_00886 at 982.566 kb on + strand, within H281DRAFT_00886 at 982.567 kb on - strand, within H281DRAFT_00886 at 982.567 kb on - strand, within H281DRAFT_00886 at 982.594 kb on - strand, within H281DRAFT_00886 at 982.678 kb on + strand at 982.678 kb on + strand at 982.715 kb on - strand at 982.723 kb on - strand at 982.777 kb on + strand at 982.861 kb on + strand at 982.862 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 979,548 + H281DRAFT_00883 0.71 -0.2 979,549 - H281DRAFT_00883 0.71 -0.5 979,776 + +0.1 979,776 + +0.4 979,777 - +0.3 980,010 + H281DRAFT_00884 0.43 +1.7 980,011 - H281DRAFT_00884 0.43 -0.1 980,035 + H281DRAFT_00884 0.47 -0.1 980,035 + H281DRAFT_00884 0.47 +0.7 980,035 + H281DRAFT_00884 0.47 +0.1 980,036 - H281DRAFT_00884 0.48 +0.0 980,088 - H281DRAFT_00884 0.57 -0.9 980,088 - H281DRAFT_00884 0.57 +0.6 980,179 - H281DRAFT_00884 0.74 +0.0 980,184 + H281DRAFT_00884 0.74 -0.0 980,184 + H281DRAFT_00884 0.74 +0.9 980,184 + H281DRAFT_00884 0.74 +0.4 980,185 - H281DRAFT_00884 0.75 +0.3 980,185 - H281DRAFT_00884 0.75 +0.2 980,185 - H281DRAFT_00884 0.75 +0.2 980,185 - H281DRAFT_00884 0.75 +0.9 980,408 - -0.2 980,459 + -0.0 980,459 + +0.2 980,459 + +0.5 980,459 + +0.3 980,459 + +0.2 980,459 + +0.3 980,460 - +0.1 980,460 - +0.4 980,708 - H281DRAFT_00885 0.12 +0.9 981,356 + H281DRAFT_00885 0.60 +0.6 981,357 - H281DRAFT_00885 0.60 +0.1 981,464 - H281DRAFT_00885 0.68 +0.2 981,604 + H281DRAFT_00885 0.79 +0.3 981,604 + H281DRAFT_00885 0.79 +0.3 981,604 + H281DRAFT_00885 0.79 +1.0 981,604 + H281DRAFT_00885 0.79 +1.4 981,605 - H281DRAFT_00885 0.79 -1.6 981,605 - H281DRAFT_00885 0.79 +0.5 981,695 - H281DRAFT_00885 0.85 +0.3 981,908 - -1.2 981,908 - +1.5 981,908 - +0.6 981,970 - -1.0 981,970 - -0.5 982,077 + H281DRAFT_00886 0.19 -0.3 982,356 + H281DRAFT_00886 0.56 -0.7 982,356 + -0.5 982,357 - H281DRAFT_00886 0.57 +0.8 982,566 + H281DRAFT_00886 0.85 -0.5 982,566 + H281DRAFT_00886 0.85 +0.3 982,567 - H281DRAFT_00886 0.85 +0.3 982,567 - H281DRAFT_00886 0.85 +0.2 982,594 - H281DRAFT_00886 0.89 -0.0 982,678 + -0.1 982,678 + -0.3 982,715 - +0.4 982,723 - +0.5 982,777 + +0.2 982,861 + -0.5 982,862 - +0.1
Or see this region's nucleotide sequence