Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00674 and H281DRAFT_00675 are separated by 14 nucleotides H281DRAFT_00675 and H281DRAFT_00676 are separated by 300 nucleotides H281DRAFT_00676 and H281DRAFT_00677 are separated by 106 nucleotides H281DRAFT_00677 and H281DRAFT_00678 are separated by 144 nucleotides
H281DRAFT_00674: H281DRAFT_00674 - malonate transporter, MadM subunit, at 755,032 to 755,799
_00674
H281DRAFT_00675: H281DRAFT_00675 - malonate transporter, MadL subunit, at 755,814 to 756,209
_00675
H281DRAFT_00676: H281DRAFT_00676 - transcriptional regulator, LysR family, at 756,510 to 757,433
_00676
H281DRAFT_00677: H281DRAFT_00677 - 3-oxoacyl-[acyl-carrier protein] reductase, at 757,540 to 758,283
_00677
H281DRAFT_00678: H281DRAFT_00678 - hypothetical protein, at 758,428 to 758,790
_00678
Position (kb) 756
757
758 Strain fitness (log2 ratio) -1
0
1
2 at 755.637 kb on - strand, within H281DRAFT_00674 at 755.770 kb on + strand at 755.771 kb on - strand at 755.771 kb on - strand at 755.776 kb on + strand at 755.777 kb on - strand at 755.998 kb on + strand, within H281DRAFT_00675 at 755.998 kb on + strand, within H281DRAFT_00675 at 755.998 kb on + strand, within H281DRAFT_00675 at 755.998 kb on + strand, within H281DRAFT_00675 at 755.999 kb on - strand, within H281DRAFT_00675 at 755.999 kb on - strand, within H281DRAFT_00675 at 756.199 kb on + strand at 756.305 kb on - strand at 756.617 kb on - strand, within H281DRAFT_00676 at 756.617 kb on - strand, within H281DRAFT_00676 at 756.730 kb on - strand, within H281DRAFT_00676 at 756.730 kb on - strand, within H281DRAFT_00676 at 756.922 kb on + strand, within H281DRAFT_00676 at 756.923 kb on - strand, within H281DRAFT_00676 at 756.961 kb on - strand, within H281DRAFT_00676 at 756.961 kb on - strand, within H281DRAFT_00676 at 757.118 kb on - strand, within H281DRAFT_00676 at 757.445 kb on - strand at 757.651 kb on + strand, within H281DRAFT_00677 at 757.980 kb on + strand, within H281DRAFT_00677 at 758.212 kb on + strand at 758.212 kb on + strand at 758.213 kb on - strand at 758.213 kb on - strand at 758.213 kb on - strand at 758.282 kb on - strand at 758.327 kb on + strand at 758.328 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 755,637 - H281DRAFT_00674 0.79 -0.6 755,770 + -0.0 755,771 - +0.1 755,771 - +0.2 755,776 + +0.1 755,777 - +0.0 755,998 + H281DRAFT_00675 0.46 +0.2 755,998 + H281DRAFT_00675 0.46 +0.4 755,998 + H281DRAFT_00675 0.46 -0.1 755,998 + H281DRAFT_00675 0.46 +0.2 755,999 - H281DRAFT_00675 0.47 +0.7 755,999 - H281DRAFT_00675 0.47 +0.6 756,199 + +0.4 756,305 - +0.2 756,617 - H281DRAFT_00676 0.12 +0.4 756,617 - H281DRAFT_00676 0.12 -0.1 756,730 - H281DRAFT_00676 0.24 +0.6 756,730 - H281DRAFT_00676 0.24 +0.2 756,922 + H281DRAFT_00676 0.45 +1.3 756,923 - H281DRAFT_00676 0.45 +1.2 756,961 - H281DRAFT_00676 0.49 +0.1 756,961 - H281DRAFT_00676 0.49 +0.6 757,118 - H281DRAFT_00676 0.66 +0.6 757,445 - -0.0 757,651 + H281DRAFT_00677 0.15 +0.0 757,980 + H281DRAFT_00677 0.59 -0.3 758,212 + +0.5 758,212 + -0.0 758,213 - +2.2 758,213 - +0.2 758,213 - -0.2 758,282 - +0.3 758,327 + -0.1 758,328 - +1.1
Or see this region's nucleotide sequence