Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00582 and H281DRAFT_00583 are separated by 188 nucleotides H281DRAFT_00583 and H281DRAFT_00584 overlap by 4 nucleotides H281DRAFT_00584 and H281DRAFT_00585 overlap by 14 nucleotides
H281DRAFT_00582: H281DRAFT_00582 - Acyl-CoA-binding protein, at 649,954 to 650,223
_00582
H281DRAFT_00583: H281DRAFT_00583 - tRNA threonylcarbamoyladenosine biosynthesis protein TsaB, at 650,412 to 651,215
_00583
H281DRAFT_00584: H281DRAFT_00584 - [SSU ribosomal protein S18P]-alanine acetyltransferase, at 651,212 to 651,706
_00584
H281DRAFT_00585: H281DRAFT_00585 - DNA polymerase, at 651,693 to 652,901
_00585
Position (kb) 651
652 Strain fitness (log2 ratio) -1
0
1 at 650.248 kb on + strand at 650.248 kb on + strand at 650.265 kb on + strand at 650.265 kb on + strand at 650.265 kb on + strand at 650.266 kb on - strand at 650.298 kb on + strand at 650.299 kb on - strand at 650.299 kb on - strand at 650.399 kb on + strand at 650.399 kb on + strand at 650.400 kb on - strand at 650.400 kb on - strand at 650.400 kb on - strand at 650.404 kb on + strand at 650.404 kb on + strand at 651.239 kb on + strand at 651.239 kb on + strand at 651.350 kb on + strand, within H281DRAFT_00584 at 651.395 kb on + strand, within H281DRAFT_00584 at 651.508 kb on + strand, within H281DRAFT_00584 at 651.578 kb on + strand, within H281DRAFT_00584 at 651.621 kb on - strand, within H281DRAFT_00584
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 650,248 + +0.7 650,248 + -0.5 650,265 + +1.1 650,265 + +0.0 650,265 + +0.9 650,266 - +0.0 650,298 + +0.3 650,299 - -0.5 650,299 - +0.6 650,399 + +1.4 650,399 + +0.0 650,400 - -0.2 650,400 - +0.5 650,400 - +0.6 650,404 + +0.2 650,404 + +0.8 651,239 + -0.0 651,239 + -0.1 651,350 + H281DRAFT_00584 0.28 -0.7 651,395 + H281DRAFT_00584 0.37 +0.1 651,508 + H281DRAFT_00584 0.60 -0.9 651,578 + H281DRAFT_00584 0.74 +0.1 651,621 - H281DRAFT_00584 0.83 -0.1
Or see this region's nucleotide sequence