Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00337 and H281DRAFT_00338 are separated by 347 nucleotides H281DRAFT_00338 and H281DRAFT_00339 are separated by 168 nucleotides H281DRAFT_00339 and H281DRAFT_00340 are separated by 160 nucleotides
H281DRAFT_00337: H281DRAFT_00337 - Uncharacterized membrane protein, at 368,899 to 370,215
_00337
H281DRAFT_00338: H281DRAFT_00338 - Protein of unknown function (DUF2964), at 370,563 to 370,781
_00338
H281DRAFT_00339: H281DRAFT_00339 - Uncharacterized membrane protein, at 370,950 to 371,414
_00339
H281DRAFT_00340: H281DRAFT_00340 - glutamine amidotransferase, at 371,575 to 372,414
_00340
Position (kb) 370
371
372 Strain fitness (log2 ratio) -2
-1
0
1 at 369.982 kb on + strand, within H281DRAFT_00337 at 369.983 kb on - strand, within H281DRAFT_00337 at 370.124 kb on - strand at 370.631 kb on + strand, within H281DRAFT_00338 at 370.955 kb on + strand at 370.956 kb on - strand at 370.956 kb on - strand at 370.959 kb on + strand at 370.960 kb on - strand at 371.100 kb on + strand, within H281DRAFT_00339 at 371.176 kb on + strand, within H281DRAFT_00339 at 371.398 kb on + strand at 371.433 kb on - strand at 371.468 kb on + strand at 371.472 kb on - strand at 371.555 kb on + strand at 371.594 kb on - strand at 371.720 kb on - strand, within H281DRAFT_00340 at 371.925 kb on + strand, within H281DRAFT_00340 at 372.241 kb on + strand, within H281DRAFT_00340 at 372.242 kb on - strand, within H281DRAFT_00340
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 369,982 + H281DRAFT_00337 0.82 -0.2 369,983 - H281DRAFT_00337 0.82 +0.2 370,124 - +0.3 370,631 + H281DRAFT_00338 0.31 +0.0 370,955 + +0.1 370,956 - +0.2 370,956 - -0.4 370,959 + +0.5 370,960 - +0.7 371,100 + H281DRAFT_00339 0.32 +0.5 371,176 + H281DRAFT_00339 0.49 +1.0 371,398 + +0.8 371,433 - -2.3 371,468 + +0.7 371,472 - -0.3 371,555 + -0.3 371,594 - +0.3 371,720 - H281DRAFT_00340 0.17 +0.7 371,925 + H281DRAFT_00340 0.42 +0.3 372,241 + H281DRAFT_00340 0.79 +0.3 372,242 - H281DRAFT_00340 0.79 +0.5
Or see this region's nucleotide sequence