Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00173 and H281DRAFT_00174 are separated by 83 nucleotides H281DRAFT_00174 and H281DRAFT_00175 are separated by 139 nucleotides H281DRAFT_00175 and H281DRAFT_00176 are separated by 428 nucleotides
H281DRAFT_00173: H281DRAFT_00173 - thioredoxin reductase (NADPH), at 186,040 to 187,041
_00173
H281DRAFT_00174: H281DRAFT_00174 - hypothetical protein, at 187,125 to 187,256
_00174
H281DRAFT_00175: H281DRAFT_00175 - DNA translocase FtsK, at 187,396 to 189,711
_00175
H281DRAFT_00176: H281DRAFT_00176 - outer membrane lipoprotein carrier protein, at 190,140 to 190,868
_00176
Position (kb) 187
188
189
190 Strain fitness (log2 ratio) -2
-1
0
1 at 187.105 kb on - strand at 187.127 kb on - strand at 187.127 kb on - strand at 187.128 kb on + strand at 187.128 kb on + strand at 187.129 kb on - strand at 187.129 kb on - strand at 187.248 kb on + strand at 187.258 kb on + strand at 187.259 kb on - strand at 187.284 kb on + strand at 187.412 kb on - strand at 187.523 kb on - strand at 187.672 kb on - strand, within H281DRAFT_00175 at 187.948 kb on + strand, within H281DRAFT_00175 at 188.346 kb on - strand, within H281DRAFT_00175 at 188.578 kb on + strand, within H281DRAFT_00175 at 188.804 kb on - strand, within H281DRAFT_00175 at 189.421 kb on + strand, within H281DRAFT_00175 at 189.422 kb on - strand at 189.523 kb on + strand at 189.523 kb on + strand at 189.524 kb on - strand at 189.906 kb on + strand at 189.907 kb on - strand at 189.931 kb on + strand at 190.147 kb on + strand at 190.147 kb on + strand at 190.148 kb on - strand at 190.512 kb on + strand, within H281DRAFT_00176
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 187,105 - +0.8 187,127 - +0.3 187,127 - +0.9 187,128 + -0.6 187,128 + -0.2 187,129 - -1.0 187,129 - +0.2 187,248 + -0.5 187,258 + +0.5 187,259 - -0.2 187,284 + +0.7 187,412 - +0.4 187,523 - +0.4 187,672 - H281DRAFT_00175 0.12 -0.8 187,948 + H281DRAFT_00175 0.24 -0.3 188,346 - H281DRAFT_00175 0.41 -2.3 188,578 + H281DRAFT_00175 0.51 +1.6 188,804 - H281DRAFT_00175 0.61 -1.3 189,421 + H281DRAFT_00175 0.87 -0.6 189,422 - +0.1 189,523 + +0.5 189,523 + -0.5 189,524 - -0.7 189,906 + +0.4 189,907 - +0.6 189,931 + -0.3 190,147 + +0.0 190,147 + +0.0 190,148 - +0.0 190,512 + H281DRAFT_00176 0.51 -2.1
Or see this region's nucleotide sequence