Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00114 and H281DRAFT_00115 are separated by 22 nucleotides H281DRAFT_00115 and H281DRAFT_00116 overlap by 4 nucleotides H281DRAFT_00116 and H281DRAFT_00117 are separated by 124 nucleotides
H281DRAFT_00114: H281DRAFT_00114 - sulfite reductase (NADPH) beta subunit, at 121,559 to 123,238
_00114
H281DRAFT_00115: H281DRAFT_00115 - Uncharacterized conserved protein, DUF934 family, at 123,261 to 123,809
_00115
H281DRAFT_00116: H281DRAFT_00116 - phosphoadenylylsulfate reductase (thioredoxin), at 123,806 to 124,558
_00116
H281DRAFT_00117: H281DRAFT_00117 - sulfate adenylyltransferase subunit 2, at 124,683 to 125,645
_00117
Position (kb) 123
124
125 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 122.888 kb on + strand, within H281DRAFT_00114 at 122.888 kb on + strand at 123.005 kb on + strand, within H281DRAFT_00114 at 123.170 kb on + strand at 123.170 kb on + strand at 123.209 kb on + strand at 123.251 kb on + strand at 123.252 kb on - strand at 123.270 kb on - strand at 123.549 kb on - strand, within H281DRAFT_00115 at 123.549 kb on - strand, within H281DRAFT_00115 at 124.052 kb on + strand at 124.347 kb on - strand, within H281DRAFT_00116 at 124.616 kb on + strand at 124.617 kb on - strand at 124.944 kb on + strand, within H281DRAFT_00117 at 125.247 kb on + strand, within H281DRAFT_00117 at 125.248 kb on - strand, within H281DRAFT_00117 at 125.248 kb on - strand, within H281DRAFT_00117 at 125.248 kb on - strand, within H281DRAFT_00117 at 125.326 kb on - strand, within H281DRAFT_00117 at 125.362 kb on - strand, within H281DRAFT_00117 at 125.362 kb on - strand, within H281DRAFT_00117
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 122,888 + H281DRAFT_00114 0.79 -4.4 122,888 + -0.0 123,005 + H281DRAFT_00114 0.86 -3.1 123,170 + -3.5 123,170 + -2.8 123,209 + -0.9 123,251 + +0.1 123,252 - -3.3 123,270 - -1.0 123,549 - H281DRAFT_00115 0.52 -3.7 123,549 - H281DRAFT_00115 0.52 -2.8 124,052 + -0.6 124,347 - H281DRAFT_00116 0.72 -4.4 124,616 + -0.6 124,617 - -2.6 124,944 + H281DRAFT_00117 0.27 -3.9 125,247 + H281DRAFT_00117 0.59 -4.6 125,248 - H281DRAFT_00117 0.59 -1.5 125,248 - H281DRAFT_00117 0.59 -4.0 125,248 - H281DRAFT_00117 0.59 -4.4 125,326 - H281DRAFT_00117 0.67 -2.9 125,362 - H281DRAFT_00117 0.71 -5.6 125,362 - H281DRAFT_00117 0.71 -4.9
Or see this region's nucleotide sequence