Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00114

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00113 and H281DRAFT_00114 are separated by 228 nucleotidesH281DRAFT_00114 and H281DRAFT_00115 are separated by 22 nucleotidesH281DRAFT_00115 and H281DRAFT_00116 overlap by 4 nucleotides H281DRAFT_00113: H281DRAFT_00113 - transcriptional regulator, LysR family, at 120,389 to 121,330 _00113 H281DRAFT_00114: H281DRAFT_00114 - sulfite reductase (NADPH) beta subunit, at 121,559 to 123,238 _00114 H281DRAFT_00115: H281DRAFT_00115 - Uncharacterized conserved protein, DUF934 family, at 123,261 to 123,809 _00115 H281DRAFT_00116: H281DRAFT_00116 - phosphoadenylylsulfate reductase (thioredoxin), at 123,806 to 124,558 _00116 Position (kb) 121 122 123 124Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 120.865 kb on + strand, within H281DRAFT_00113at 120.867 kb on + strand, within H281DRAFT_00113at 120.867 kb on + strand, within H281DRAFT_00113at 120.867 kb on + strand, within H281DRAFT_00113at 121.078 kb on + strand, within H281DRAFT_00113at 121.249 kb on + strandat 121.249 kb on + strandat 121.251 kb on + strandat 121.252 kb on - strandat 121.332 kb on + strandat 121.333 kb on - strandat 121.334 kb on + strandat 121.428 kb on - strandat 121.435 kb on - strandat 121.451 kb on + strandat 121.451 kb on + strandat 121.452 kb on - strandat 121.457 kb on + strandat 121.457 kb on + strandat 121.563 kb on - strandat 121.563 kb on - strandat 121.563 kb on - strandat 121.568 kb on + strandat 121.569 kb on - strandat 121.694 kb on + strandat 121.698 kb on - strandat 121.712 kb on + strandat 121.713 kb on - strandat 122.120 kb on + strand, within H281DRAFT_00114at 122.120 kb on + strand, within H281DRAFT_00114at 122.268 kb on - strand, within H281DRAFT_00114at 122.297 kb on + strand, within H281DRAFT_00114at 122.298 kb on - strand, within H281DRAFT_00114at 122.433 kb on - strand, within H281DRAFT_00114at 122.545 kb on + strand, within H281DRAFT_00114at 122.592 kb on + strand, within H281DRAFT_00114at 122.654 kb on + strand, within H281DRAFT_00114at 122.888 kb on + strand, within H281DRAFT_00114at 122.888 kb on + strandat 123.005 kb on + strand, within H281DRAFT_00114at 123.170 kb on + strandat 123.170 kb on + strandat 123.209 kb on + strandat 123.251 kb on + strandat 123.252 kb on - strandat 123.270 kb on - strandat 123.549 kb on - strand, within H281DRAFT_00115at 123.549 kb on - strand, within H281DRAFT_00115at 124.052 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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120,865 + H281DRAFT_00113 0.51 -0.0
120,867 + H281DRAFT_00113 0.51 +0.2
120,867 + H281DRAFT_00113 0.51 -0.8
120,867 + H281DRAFT_00113 0.51 -2.1
121,078 + H281DRAFT_00113 0.73 -0.6
121,249 + -0.4
121,249 + -0.2
121,251 + +0.1
121,252 - -2.4
121,332 + -0.1
121,333 - -0.2
121,334 + -0.3
121,428 - -1.1
121,435 - -1.4
121,451 + +0.1
121,451 + +0.0
121,452 - -1.7
121,457 + -0.5
121,457 + +0.1
121,563 - -1.7
121,563 - -3.0
121,563 - -3.2
121,568 + -3.1
121,569 - -0.6
121,694 + -1.4
121,698 - -1.0
121,712 + -2.6
121,713 - -2.7
122,120 + H281DRAFT_00114 0.33 -2.6
122,120 + H281DRAFT_00114 0.33 -4.4
122,268 - H281DRAFT_00114 0.42 -2.7
122,297 + H281DRAFT_00114 0.44 -2.0
122,298 - H281DRAFT_00114 0.44 +0.3
122,433 - H281DRAFT_00114 0.52 -2.1
122,545 + H281DRAFT_00114 0.59 -3.1
122,592 + H281DRAFT_00114 0.61 -3.7
122,654 + H281DRAFT_00114 0.65 -4.1
122,888 + H281DRAFT_00114 0.79 -4.4
122,888 + -0.0
123,005 + H281DRAFT_00114 0.86 -3.1
123,170 + -3.5
123,170 + -2.8
123,209 + -0.9
123,251 + +0.1
123,252 - -3.3
123,270 - -1.0
123,549 - H281DRAFT_00115 0.52 -3.7
123,549 - H281DRAFT_00115 0.52 -2.8
124,052 + -0.6

Or see this region's nucleotide sequence