Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09550 and PGA1_c09560 are separated by 124 nucleotides PGA1_c09560 and PGA1_c09570 are separated by 3 nucleotides PGA1_c09570 and PGA1_c09580 are separated by 4 nucleotides PGA1_c09580 and PGA1_c09590 are separated by 79 nucleotides
PGA1_c09550: PGA1_c09550 - Glutaminase (EC 3.5.1.2) <small>(from data)</small>, at 979,991 to 980,905
_c09550
PGA1_c09560: PGA1_c09560 - UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD, at 981,030 to 982,427
_c09560
PGA1_c09570: PGA1_c09570 - putative HTH-type transcriptional regulator, MarR family, at 982,431 to 982,874
_c09570
PGA1_c09580: PGA1_c09580 - antibiotic biosynthesis monooxygenase-like protein, at 982,879 to 983,172
_c09580
PGA1_c09590: PGA1_c09590 - uncharacterized protein YhiN, at 983,252 to 984,433
_c09590
Position (kb) 981
982
983 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 980.066 kb on + strand at 980.074 kb on - strand at 980.113 kb on + strand, within PGA1_c09550 at 980.206 kb on - strand, within PGA1_c09550 at 980.238 kb on - strand, within PGA1_c09550 at 980.291 kb on - strand, within PGA1_c09550 at 980.358 kb on + strand, within PGA1_c09550 at 980.358 kb on + strand, within PGA1_c09550 at 980.400 kb on + strand, within PGA1_c09550 at 980.408 kb on - strand, within PGA1_c09550 at 980.408 kb on - strand, within PGA1_c09550 at 980.408 kb on - strand, within PGA1_c09550 at 980.408 kb on - strand, within PGA1_c09550 at 980.487 kb on - strand, within PGA1_c09550 at 980.515 kb on + strand, within PGA1_c09550 at 980.515 kb on + strand, within PGA1_c09550 at 980.520 kb on + strand, within PGA1_c09550 at 980.536 kb on + strand, within PGA1_c09550 at 980.544 kb on + strand, within PGA1_c09550 at 980.556 kb on - strand, within PGA1_c09550 at 980.623 kb on - strand, within PGA1_c09550 at 980.635 kb on - strand, within PGA1_c09550 at 980.675 kb on + strand, within PGA1_c09550 at 980.675 kb on + strand, within PGA1_c09550 at 980.675 kb on + strand, within PGA1_c09550 at 980.683 kb on - strand, within PGA1_c09550 at 980.683 kb on - strand, within PGA1_c09550 at 980.683 kb on - strand, within PGA1_c09550 at 980.683 kb on - strand, within PGA1_c09550 at 980.701 kb on - strand, within PGA1_c09550 at 980.701 kb on - strand, within PGA1_c09550 at 980.719 kb on - strand, within PGA1_c09550 at 980.745 kb on + strand, within PGA1_c09550 at 980.745 kb on + strand, within PGA1_c09550 at 980.745 kb on + strand, within PGA1_c09550 at 980.753 kb on - strand, within PGA1_c09550 at 980.796 kb on + strand, within PGA1_c09550 at 980.802 kb on + strand, within PGA1_c09550 at 980.810 kb on - strand, within PGA1_c09550 at 980.847 kb on + strand at 980.850 kb on - strand at 980.855 kb on - strand at 980.938 kb on - strand at 981.020 kb on + strand at 982.421 kb on + strand at 982.423 kb on + strand at 982.423 kb on + strand at 982.531 kb on - strand, within PGA1_c09570 at 982.564 kb on + strand, within PGA1_c09570 at 982.590 kb on + strand, within PGA1_c09570 at 982.590 kb on + strand, within PGA1_c09570 at 982.594 kb on - strand, within PGA1_c09570 at 982.598 kb on - strand, within PGA1_c09570 at 982.608 kb on - strand, within PGA1_c09570 at 982.726 kb on - strand, within PGA1_c09570 at 982.727 kb on - strand, within PGA1_c09570 at 982.820 kb on + strand, within PGA1_c09570 at 982.828 kb on - strand, within PGA1_c09570 at 982.830 kb on + strand at 982.830 kb on + strand at 982.849 kb on - strand at 982.882 kb on + strand at 982.885 kb on - strand at 982.885 kb on - strand at 982.890 kb on - strand at 982.913 kb on + strand, within PGA1_c09580 at 982.913 kb on + strand, within PGA1_c09580 at 982.921 kb on - strand, within PGA1_c09580 at 983.013 kb on + strand, within PGA1_c09580 at 983.085 kb on - strand, within PGA1_c09580 at 983.132 kb on - strand, within PGA1_c09580 at 983.138 kb on - strand, within PGA1_c09580 at 983.250 kb on + strand at 983.250 kb on + strand at 983.258 kb on - strand at 983.284 kb on - strand at 983.297 kb on - strand at 983.297 kb on - strand at 983.330 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 980,066 + -1.9 980,074 - -3.3 980,113 + PGA1_c09550 0.13 -0.9 980,206 - PGA1_c09550 0.23 -3.5 980,238 - PGA1_c09550 0.27 -4.1 980,291 - PGA1_c09550 0.33 -3.6 980,358 + PGA1_c09550 0.40 -2.7 980,358 + PGA1_c09550 0.40 -0.9 980,400 + PGA1_c09550 0.45 -1.1 980,408 - PGA1_c09550 0.46 -2.3 980,408 - PGA1_c09550 0.46 -4.5 980,408 - PGA1_c09550 0.46 -3.3 980,408 - PGA1_c09550 0.46 -3.1 980,487 - PGA1_c09550 0.54 -1.5 980,515 + PGA1_c09550 0.57 -2.9 980,515 + PGA1_c09550 0.57 -2.7 980,520 + PGA1_c09550 0.58 +0.5 980,536 + PGA1_c09550 0.60 -1.1 980,544 + PGA1_c09550 0.60 -2.9 980,556 - PGA1_c09550 0.62 -1.8 980,623 - PGA1_c09550 0.69 -2.6 980,635 - PGA1_c09550 0.70 -1.8 980,675 + PGA1_c09550 0.75 -2.1 980,675 + PGA1_c09550 0.75 -1.5 980,675 + PGA1_c09550 0.75 -2.7 980,683 - PGA1_c09550 0.76 -1.4 980,683 - PGA1_c09550 0.76 -1.7 980,683 - PGA1_c09550 0.76 -1.3 980,683 - PGA1_c09550 0.76 -1.3 980,701 - PGA1_c09550 0.78 -1.5 980,701 - PGA1_c09550 0.78 -0.7 980,719 - PGA1_c09550 0.80 -1.9 980,745 + PGA1_c09550 0.82 -1.9 980,745 + PGA1_c09550 0.82 -3.4 980,745 + PGA1_c09550 0.82 -0.9 980,753 - PGA1_c09550 0.83 -2.3 980,796 + PGA1_c09550 0.88 -1.7 980,802 + PGA1_c09550 0.89 -1.4 980,810 - PGA1_c09550 0.90 -2.5 980,847 + -0.5 980,850 - -2.9 980,855 - -2.1 980,938 - -0.1 981,020 + +0.5 982,421 + +0.3 982,423 + -0.7 982,423 + -0.6 982,531 - PGA1_c09570 0.23 +0.9 982,564 + PGA1_c09570 0.30 -0.1 982,590 + PGA1_c09570 0.36 -0.4 982,590 + PGA1_c09570 0.36 +0.3 982,594 - PGA1_c09570 0.37 +0.9 982,598 - PGA1_c09570 0.38 -0.4 982,608 - PGA1_c09570 0.40 +0.1 982,726 - PGA1_c09570 0.66 +0.3 982,727 - PGA1_c09570 0.67 -0.1 982,820 + PGA1_c09570 0.88 -0.0 982,828 - PGA1_c09570 0.89 +0.7 982,830 + +0.4 982,830 + -0.0 982,849 - -0.3 982,882 + -1.1 982,885 - -0.2 982,885 - +0.3 982,890 - -0.2 982,913 + PGA1_c09580 0.12 -0.8 982,913 + PGA1_c09580 0.12 -0.1 982,921 - PGA1_c09580 0.14 -0.5 983,013 + PGA1_c09580 0.46 -2.1 983,085 - PGA1_c09580 0.70 +0.3 983,132 - PGA1_c09580 0.86 +0.0 983,138 - PGA1_c09580 0.88 +0.2 983,250 + -0.5 983,250 + +0.6 983,258 - +0.8 983,284 - -0.7 983,297 - +0.5 983,297 - +1.9 983,330 + -0.0
Or see this region's nucleotide sequence