Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06620

Experiment: L-Glutamine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c06600 and PGA1_c06610 are separated by 1 nucleotidesPGA1_c06610 and PGA1_c06620 are separated by 1 nucleotidesPGA1_c06620 and PGA1_c06630 are separated by 104 nucleotidesPGA1_c06630 and PGA1_c06640 are separated by 177 nucleotides PGA1_c06600: PGA1_c06600 - putative transcriptional regulator, AsnC family, at 678,069 to 678,527 _c06600 PGA1_c06610: PGA1_c06610 - hypothetical protein, at 678,529 to 679,221 _c06610 PGA1_c06620: PGA1_c06620 - putative FAD-dependent hydroxylase, at 679,223 to 680,419 _c06620 PGA1_c06630: PGA1_c06630 - hypothetical protein, at 680,524 to 680,769 _c06630 PGA1_c06640: PGA1_c06640 - putative pyrimidine 5'-nucleotidase, at 680,947 to 681,588 _c06640 Position (kb) 679 680 681Strain fitness (log2 ratio) -2 -1 0 1at 678.475 kb on - strand, within PGA1_c06600at 678.526 kb on + strandat 678.526 kb on + strandat 678.526 kb on + strandat 678.546 kb on + strandat 678.615 kb on + strand, within PGA1_c06610at 678.615 kb on + strand, within PGA1_c06610at 678.616 kb on + strand, within PGA1_c06610at 678.623 kb on - strand, within PGA1_c06610at 678.623 kb on - strand, within PGA1_c06610at 678.624 kb on - strand, within PGA1_c06610at 678.624 kb on - strand, within PGA1_c06610at 678.644 kb on + strand, within PGA1_c06610at 678.682 kb on - strand, within PGA1_c06610at 678.706 kb on - strand, within PGA1_c06610at 678.780 kb on + strand, within PGA1_c06610at 678.815 kb on + strand, within PGA1_c06610at 678.819 kb on + strand, within PGA1_c06610at 678.823 kb on - strand, within PGA1_c06610at 678.826 kb on + strand, within PGA1_c06610at 678.859 kb on - strand, within PGA1_c06610at 678.861 kb on - strand, within PGA1_c06610at 678.870 kb on + strand, within PGA1_c06610at 678.947 kb on + strand, within PGA1_c06610at 678.950 kb on - strand, within PGA1_c06610at 679.019 kb on - strand, within PGA1_c06610at 679.043 kb on - strand, within PGA1_c06610at 679.046 kb on + strand, within PGA1_c06610at 679.059 kb on - strand, within PGA1_c06610at 679.116 kb on + strand, within PGA1_c06610at 679.140 kb on + strand, within PGA1_c06610at 679.145 kb on + strand, within PGA1_c06610at 679.145 kb on + strand, within PGA1_c06610at 679.153 kb on - strandat 679.153 kb on - strandat 679.153 kb on - strandat 679.167 kb on + strandat 679.172 kb on + strandat 679.185 kb on - strandat 679.250 kb on - strandat 680.451 kb on + strandat 680.469 kb on - strandat 680.565 kb on - strand, within PGA1_c06630at 680.575 kb on - strand, within PGA1_c06630at 680.624 kb on + strand, within PGA1_c06630at 680.732 kb on + strand, within PGA1_c06630at 680.732 kb on + strand, within PGA1_c06630at 680.732 kb on + strand, within PGA1_c06630at 680.740 kb on - strand, within PGA1_c06630at 680.740 kb on - strand, within PGA1_c06630at 680.779 kb on + strandat 680.787 kb on - strandat 680.787 kb on - strandat 680.788 kb on - strandat 680.803 kb on + strandat 680.827 kb on - strandat 680.945 kb on + strandat 680.953 kb on - strandat 680.967 kb on + strandat 681.034 kb on + strand, within PGA1_c06640at 681.085 kb on - strand, within PGA1_c06640at 681.085 kb on - strand, within PGA1_c06640at 681.101 kb on + strand, within PGA1_c06640at 681.201 kb on + strand, within PGA1_c06640at 681.207 kb on - strand, within PGA1_c06640at 681.209 kb on - strand, within PGA1_c06640at 681.218 kb on + strand, within PGA1_c06640at 681.218 kb on + strand, within PGA1_c06640at 681.218 kb on + strand, within PGA1_c06640at 681.218 kb on + strand, within PGA1_c06640at 681.226 kb on - strand, within PGA1_c06640at 681.226 kb on - strand, within PGA1_c06640at 681.281 kb on + strand, within PGA1_c06640at 681.281 kb on + strand, within PGA1_c06640at 681.289 kb on - strand, within PGA1_c06640at 681.289 kb on - strand, within PGA1_c06640at 681.381 kb on + strand, within PGA1_c06640

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
remove
678,475 - PGA1_c06600 0.88 -0.2
678,526 + -0.3
678,526 + +0.1
678,526 + -0.8
678,546 + +0.7
678,615 + PGA1_c06610 0.12 +1.1
678,615 + PGA1_c06610 0.12 +0.3
678,616 + PGA1_c06610 0.13 -0.3
678,623 - PGA1_c06610 0.14 +0.5
678,623 - PGA1_c06610 0.14 -1.1
678,624 - PGA1_c06610 0.14 +0.7
678,624 - PGA1_c06610 0.14 +0.7
678,644 + PGA1_c06610 0.17 +0.4
678,682 - PGA1_c06610 0.22 -0.8
678,706 - PGA1_c06610 0.26 -0.3
678,780 + PGA1_c06610 0.36 +0.5
678,815 + PGA1_c06610 0.41 +0.7
678,819 + PGA1_c06610 0.42 +0.1
678,823 - PGA1_c06610 0.42 -0.6
678,826 + PGA1_c06610 0.43 +0.4
678,859 - PGA1_c06610 0.48 -0.2
678,861 - PGA1_c06610 0.48 -0.8
678,870 + PGA1_c06610 0.49 +0.9
678,947 + PGA1_c06610 0.60 -0.4
678,950 - PGA1_c06610 0.61 +0.3
679,019 - PGA1_c06610 0.71 +0.0
679,043 - PGA1_c06610 0.74 -0.1
679,046 + PGA1_c06610 0.75 -0.5
679,059 - PGA1_c06610 0.76 +0.3
679,116 + PGA1_c06610 0.85 +0.3
679,140 + PGA1_c06610 0.88 -0.5
679,145 + PGA1_c06610 0.89 -0.3
679,145 + PGA1_c06610 0.89 -0.8
679,153 - -0.8
679,153 - -1.7
679,153 - -0.6
679,167 + -0.9
679,172 + -0.7
679,185 - -0.4
679,250 - +0.5
680,451 + +0.7
680,469 - +0.2
680,565 - PGA1_c06630 0.17 +0.1
680,575 - PGA1_c06630 0.21 -0.7
680,624 + PGA1_c06630 0.41 -0.6
680,732 + PGA1_c06630 0.85 -0.9
680,732 + PGA1_c06630 0.85 +0.4
680,732 + PGA1_c06630 0.85 -0.7
680,740 - PGA1_c06630 0.88 -1.2
680,740 - PGA1_c06630 0.88 -2.0
680,779 + +0.6
680,787 - -0.5
680,787 - +0.7
680,788 - +1.5
680,803 + +0.6
680,827 - -0.1
680,945 + +0.9
680,953 - +0.2
680,967 + +0.4
681,034 + PGA1_c06640 0.14 +0.9
681,085 - PGA1_c06640 0.21 -1.1
681,085 - PGA1_c06640 0.21 -0.8
681,101 + PGA1_c06640 0.24 +1.4
681,201 + PGA1_c06640 0.40 -0.8
681,207 - PGA1_c06640 0.40 +0.1
681,209 - PGA1_c06640 0.41 -1.5
681,218 + PGA1_c06640 0.42 +0.1
681,218 + PGA1_c06640 0.42 +1.4
681,218 + PGA1_c06640 0.42 -0.8
681,218 + PGA1_c06640 0.42 +1.5
681,226 - PGA1_c06640 0.43 -0.6
681,226 - PGA1_c06640 0.43 +0.6
681,281 + PGA1_c06640 0.52 +1.7
681,281 + PGA1_c06640 0.52 +0.5
681,289 - PGA1_c06640 0.53 +0.9
681,289 - PGA1_c06640 0.53 +0.3
681,381 + PGA1_c06640 0.68 +0.5

Or see this region's nucleotide sequence