Experiment: L-Proline
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2194 and HP15_2195 overlap by 4 nucleotides HP15_2195 and HP15_2196 are separated by 90 nucleotides
HP15_2194: HP15_2194 - amino acid ABC transporter, permease protein, at 2,310,973 to 2,312,061
_2194
HP15_2195: HP15_2195 - amino acid ABC transporter, permease protein, at 2,312,058 to 2,313,245
_2195
HP15_2196: HP15_2196 - glutamate/glutamine/aspartate/asparagine ABC transporter, periplasmic substrate-binding protein, at 2,313,336 to 2,314,379
_2196
Position (kb)
2312
2313
2314 Strain fitness (log2 ratio)
-1
0
1 at 2311.117 kb on - strand, within HP15_2194 at 2311.122 kb on - strand, within HP15_2194 at 2311.122 kb on - strand, within HP15_2194 at 2311.124 kb on + strand, within HP15_2194 at 2311.124 kb on + strand, within HP15_2194 at 2311.132 kb on - strand, within HP15_2194 at 2311.177 kb on - strand, within HP15_2194 at 2311.261 kb on + strand, within HP15_2194 at 2311.356 kb on + strand, within HP15_2194 at 2311.358 kb on - strand, within HP15_2194 at 2311.364 kb on - strand, within HP15_2194 at 2311.364 kb on - strand, within HP15_2194 at 2311.364 kb on - strand, within HP15_2194 at 2311.364 kb on - strand, within HP15_2194 at 2311.364 kb on - strand, within HP15_2194 at 2311.593 kb on + strand, within HP15_2194 at 2311.615 kb on + strand, within HP15_2194 at 2311.703 kb on - strand, within HP15_2194 at 2311.737 kb on - strand, within HP15_2194 at 2311.857 kb on + strand, within HP15_2194 at 2311.923 kb on + strand, within HP15_2194 at 2311.923 kb on + strand, within HP15_2194 at 2311.923 kb on + strand, within HP15_2194 at 2311.931 kb on - strand, within HP15_2194 at 2311.931 kb on - strand, within HP15_2194 at 2311.931 kb on - strand, within HP15_2194 at 2311.948 kb on + strand, within HP15_2194 at 2311.957 kb on - strand at 2311.979 kb on - strand at 2312.066 kb on - strand at 2312.298 kb on + strand, within HP15_2195 at 2312.333 kb on - strand, within HP15_2195 at 2312.343 kb on + strand, within HP15_2195 at 2312.351 kb on - strand, within HP15_2195 at 2312.358 kb on - strand, within HP15_2195 at 2312.366 kb on - strand, within HP15_2195 at 2312.446 kb on - strand, within HP15_2195 at 2312.453 kb on - strand, within HP15_2195 at 2312.857 kb on + strand, within HP15_2195 at 2312.973 kb on + strand, within HP15_2195 at 2313.144 kb on - strand at 2313.144 kb on - strand at 2313.202 kb on + strand at 2313.210 kb on - strand at 2313.210 kb on - strand at 2313.269 kb on + strand at 2313.335 kb on - strand at 2313.381 kb on - strand at 2313.508 kb on + strand, within HP15_2196 at 2313.583 kb on - strand, within HP15_2196 at 2313.604 kb on + strand, within HP15_2196 at 2313.604 kb on - strand, within HP15_2196 at 2313.702 kb on + strand, within HP15_2196 at 2313.779 kb on - strand, within HP15_2196 at 2313.801 kb on + strand, within HP15_2196 at 2313.803 kb on + strand, within HP15_2196 at 2313.803 kb on + strand, within HP15_2196 at 2313.823 kb on - strand, within HP15_2196 at 2313.932 kb on + strand, within HP15_2196 at 2313.980 kb on - strand, within HP15_2196 at 2314.029 kb on + strand, within HP15_2196 at 2314.105 kb on - strand, within HP15_2196 at 2314.105 kb on - strand, within HP15_2196
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline remove 2,311,117 - HP15_2194 0.13 -0.3 2,311,122 - HP15_2194 0.14 +0.3 2,311,122 - HP15_2194 0.14 +0.8 2,311,124 + HP15_2194 0.14 -0.7 2,311,124 + HP15_2194 0.14 +0.1 2,311,132 - HP15_2194 0.15 -1.0 2,311,177 - HP15_2194 0.19 -0.6 2,311,261 + HP15_2194 0.26 +0.5 2,311,356 + HP15_2194 0.35 -1.3 2,311,358 - HP15_2194 0.35 +0.7 2,311,364 - HP15_2194 0.36 +0.6 2,311,364 - HP15_2194 0.36 +0.8 2,311,364 - HP15_2194 0.36 -0.0 2,311,364 - HP15_2194 0.36 -1.0 2,311,364 - HP15_2194 0.36 -1.4 2,311,593 + HP15_2194 0.57 -0.8 2,311,615 + HP15_2194 0.59 -0.5 2,311,703 - HP15_2194 0.67 +0.5 2,311,737 - HP15_2194 0.70 +0.7 2,311,857 + HP15_2194 0.81 -1.3 2,311,923 + HP15_2194 0.87 +0.2 2,311,923 + HP15_2194 0.87 -0.6 2,311,923 + HP15_2194 0.87 +0.7 2,311,931 - HP15_2194 0.88 -0.1 2,311,931 - HP15_2194 0.88 -0.2 2,311,931 - HP15_2194 0.88 +0.0 2,311,948 + HP15_2194 0.90 -0.4 2,311,957 - -0.1 2,311,979 - -0.9 2,312,066 - +0.6 2,312,298 + HP15_2195 0.20 -0.4 2,312,333 - HP15_2195 0.23 -0.5 2,312,343 + HP15_2195 0.24 +0.5 2,312,351 - HP15_2195 0.25 +0.4 2,312,358 - HP15_2195 0.25 +0.4 2,312,366 - HP15_2195 0.26 +0.3 2,312,446 - HP15_2195 0.33 -0.3 2,312,453 - HP15_2195 0.33 +0.6 2,312,857 + HP15_2195 0.67 -0.5 2,312,973 + HP15_2195 0.77 -1.0 2,313,144 - -0.1 2,313,144 - -1.0 2,313,202 + -0.8 2,313,210 - -0.4 2,313,210 - +0.4 2,313,269 + -1.2 2,313,335 - -0.7 2,313,381 - -1.1 2,313,508 + HP15_2196 0.16 +0.5 2,313,583 - HP15_2196 0.24 +0.1 2,313,604 + HP15_2196 0.26 -1.4 2,313,604 - HP15_2196 0.26 -1.0 2,313,702 + HP15_2196 0.35 -0.8 2,313,779 - HP15_2196 0.42 -0.7 2,313,801 + HP15_2196 0.45 -0.6 2,313,803 + HP15_2196 0.45 +0.4 2,313,803 + HP15_2196 0.45 +0.2 2,313,823 - HP15_2196 0.47 +0.9 2,313,932 + HP15_2196 0.57 +0.3 2,313,980 - HP15_2196 0.62 -0.6 2,314,029 + HP15_2196 0.66 -0.1 2,314,105 - HP15_2196 0.74 -0.6 2,314,105 - HP15_2196 0.74 -1.3
Or see this region's nucleotide sequence