Strain Fitness in Marinobacter adhaerens HP15 around HP15_1406

Experiment: L-Proline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1405 and HP15_1406 are separated by 592 nucleotidesHP15_1406 and HP15_1407 overlap by 4 nucleotidesHP15_1407 and HP15_1408 are separated by 17 nucleotides HP15_1405: HP15_1405 - conserved hypothetical protein, membrane, at 1,485,250 to 1,485,927 _1405 HP15_1406: HP15_1406 - protein containing signal transduction histidine kinase, internal region / ATP-binding region, ATPase-like protein, at 1,486,520 to 1,486,996 _1406 HP15_1407: HP15_1407 - two component transcriptional regulator, LytTR family, at 1,486,993 to 1,487,745 _1407 HP15_1408: HP15_1408 - pirin domain protein, at 1,487,763 to 1,488,674 _1408 Position (kb) 1486 1487Strain fitness (log2 ratio) -1 0 1 2at 1485.520 kb on - strand, within HP15_1405at 1485.525 kb on - strand, within HP15_1405at 1485.549 kb on + strand, within HP15_1405at 1485.595 kb on + strand, within HP15_1405at 1485.614 kb on + strand, within HP15_1405at 1485.622 kb on - strand, within HP15_1405at 1485.627 kb on - strand, within HP15_1405at 1485.650 kb on + strand, within HP15_1405at 1485.700 kb on + strand, within HP15_1405at 1485.769 kb on + strand, within HP15_1405at 1485.834 kb on + strand, within HP15_1405at 1485.955 kb on + strandat 1485.963 kb on - strandat 1486.035 kb on + strandat 1486.240 kb on + strandat 1486.334 kb on + strandat 1486.337 kb on - strandat 1486.515 kb on - strandat 1486.540 kb on + strandat 1486.559 kb on + strandat 1486.660 kb on - strand, within HP15_1406at 1486.745 kb on + strand, within HP15_1406at 1486.771 kb on + strand, within HP15_1406at 1486.833 kb on - strand, within HP15_1406at 1486.933 kb on - strand, within HP15_1406at 1486.980 kb on - strandat 1487.028 kb on - strandat 1487.072 kb on - strand, within HP15_1407at 1487.167 kb on + strand, within HP15_1407at 1487.239 kb on + strand, within HP15_1407at 1487.292 kb on + strand, within HP15_1407at 1487.292 kb on + strand, within HP15_1407at 1487.300 kb on - strand, within HP15_1407at 1487.309 kb on + strand, within HP15_1407at 1487.370 kb on - strand, within HP15_1407at 1487.374 kb on - strand, within HP15_1407at 1487.457 kb on + strand, within HP15_1407at 1487.746 kb on + strandat 1487.787 kb on + strandat 1487.874 kb on - strand, within HP15_1408at 1487.969 kb on + strand, within HP15_1408

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline
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1,485,520 - HP15_1405 0.40 -0.9
1,485,525 - HP15_1405 0.41 +1.3
1,485,549 + HP15_1405 0.44 -0.4
1,485,595 + HP15_1405 0.51 -1.0
1,485,614 + HP15_1405 0.54 +1.0
1,485,622 - HP15_1405 0.55 -0.2
1,485,627 - HP15_1405 0.56 +0.6
1,485,650 + HP15_1405 0.59 -0.2
1,485,700 + HP15_1405 0.66 +0.6
1,485,769 + HP15_1405 0.77 +0.2
1,485,834 + HP15_1405 0.86 -0.9
1,485,955 + +0.9
1,485,963 - +1.1
1,486,035 + +1.8
1,486,240 + +0.9
1,486,334 + +1.1
1,486,337 - +0.3
1,486,515 - +1.1
1,486,540 + -1.4
1,486,559 + -0.7
1,486,660 - HP15_1406 0.29 -0.8
1,486,745 + HP15_1406 0.47 -0.4
1,486,771 + HP15_1406 0.53 +0.2
1,486,833 - HP15_1406 0.66 -0.4
1,486,933 - HP15_1406 0.87 +0.1
1,486,980 - -0.1
1,487,028 - -0.0
1,487,072 - HP15_1407 0.10 +0.3
1,487,167 + HP15_1407 0.23 +0.6
1,487,239 + HP15_1407 0.33 +0.0
1,487,292 + HP15_1407 0.40 -0.4
1,487,292 + HP15_1407 0.40 -0.5
1,487,300 - HP15_1407 0.41 -0.4
1,487,309 + HP15_1407 0.42 +0.8
1,487,370 - HP15_1407 0.50 +1.3
1,487,374 - HP15_1407 0.51 +0.4
1,487,457 + HP15_1407 0.62 +1.9
1,487,746 + +0.9
1,487,787 + +0.0
1,487,874 - HP15_1408 0.12 -0.3
1,487,969 + HP15_1408 0.23 -0.4

Or see this region's nucleotide sequence