Experiment: L-Proline
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1132 and HP15_1133 overlap by 4 nucleotides HP15_1133 and HP15_1134 are separated by 245 nucleotides HP15_1134 and HP15_1135 are separated by 286 nucleotides
HP15_1132: HP15_1132 - gonadoliberin III-related protein, at 1,160,910 to 1,162,427
_1132
HP15_1133: HP15_1133 - protein containing DUF785, at 1,162,424 to 1,163,122
_1133
HP15_1134: HP15_1134 - conserved hypothetical protein, at 1,163,368 to 1,163,757
_1134
HP15_1135: HP15_1135 - DNA recombination protein RmuC, at 1,164,044 to 1,165,519
_1135
Position (kb)
1162
1163
1164 Strain fitness (log2 ratio)
-1
0
1
2 at 1161.524 kb on + strand, within HP15_1132 at 1161.524 kb on + strand, within HP15_1132 at 1161.571 kb on + strand, within HP15_1132 at 1161.701 kb on + strand, within HP15_1132 at 1161.709 kb on - strand, within HP15_1132 at 1161.788 kb on + strand, within HP15_1132 at 1161.854 kb on + strand, within HP15_1132 at 1161.854 kb on + strand, within HP15_1132 at 1161.929 kb on + strand, within HP15_1132 at 1161.937 kb on - strand, within HP15_1132 at 1161.964 kb on + strand, within HP15_1132 at 1161.982 kb on - strand, within HP15_1132 at 1162.080 kb on + strand, within HP15_1132 at 1162.087 kb on + strand, within HP15_1132 at 1162.205 kb on + strand, within HP15_1132 at 1162.236 kb on + strand, within HP15_1132 at 1162.436 kb on + strand at 1162.455 kb on + strand at 1162.481 kb on - strand at 1162.488 kb on + strand at 1162.498 kb on + strand, within HP15_1133 at 1162.498 kb on + strand, within HP15_1133 at 1162.506 kb on - strand, within HP15_1133 at 1162.526 kb on + strand, within HP15_1133 at 1162.526 kb on + strand, within HP15_1133 at 1162.534 kb on - strand, within HP15_1133 at 1162.633 kb on - strand, within HP15_1133 at 1162.646 kb on + strand, within HP15_1133 at 1162.646 kb on + strand, within HP15_1133 at 1162.646 kb on + strand, within HP15_1133 at 1162.654 kb on - strand, within HP15_1133 at 1162.715 kb on + strand, within HP15_1133 at 1162.820 kb on + strand, within HP15_1133 at 1163.006 kb on + strand, within HP15_1133 at 1163.006 kb on + strand, within HP15_1133 at 1163.006 kb on + strand, within HP15_1133 at 1163.014 kb on - strand, within HP15_1133 at 1163.014 kb on - strand, within HP15_1133 at 1163.014 kb on - strand, within HP15_1133 at 1163.014 kb on - strand, within HP15_1133 at 1163.014 kb on - strand, within HP15_1133 at 1163.019 kb on - strand, within HP15_1133 at 1163.085 kb on + strand at 1163.104 kb on + strand at 1163.152 kb on + strand at 1163.192 kb on - strand at 1163.236 kb on - strand at 1163.236 kb on - strand at 1163.236 kb on - strand at 1163.304 kb on + strand at 1163.307 kb on - strand at 1163.356 kb on - strand at 1163.364 kb on - strand at 1163.366 kb on - strand at 1163.539 kb on + strand, within HP15_1134 at 1163.547 kb on - strand, within HP15_1134 at 1163.573 kb on + strand, within HP15_1134 at 1163.573 kb on + strand, within HP15_1134 at 1163.583 kb on + strand, within HP15_1134 at 1163.645 kb on + strand, within HP15_1134 at 1163.672 kb on - strand, within HP15_1134 at 1163.679 kb on + strand, within HP15_1134 at 1163.692 kb on + strand, within HP15_1134 at 1163.792 kb on + strand at 1163.908 kb on + strand at 1163.945 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline remove 1,161,524 + HP15_1132 0.40 -0.8 1,161,524 + HP15_1132 0.40 +0.2 1,161,571 + HP15_1132 0.44 -0.5 1,161,701 + HP15_1132 0.52 -0.4 1,161,709 - HP15_1132 0.53 +0.1 1,161,788 + HP15_1132 0.58 +0.5 1,161,854 + HP15_1132 0.62 +0.4 1,161,854 + HP15_1132 0.62 +0.5 1,161,929 + HP15_1132 0.67 +1.4 1,161,937 - HP15_1132 0.68 +0.4 1,161,964 + HP15_1132 0.69 -0.3 1,161,982 - HP15_1132 0.71 +0.0 1,162,080 + HP15_1132 0.77 +0.4 1,162,087 + HP15_1132 0.78 -0.2 1,162,205 + HP15_1132 0.85 -0.6 1,162,236 + HP15_1132 0.87 -0.4 1,162,436 + -1.6 1,162,455 + -0.3 1,162,481 - -0.1 1,162,488 + +0.9 1,162,498 + HP15_1133 0.11 +1.1 1,162,498 + HP15_1133 0.11 +0.0 1,162,506 - HP15_1133 0.12 -0.6 1,162,526 + HP15_1133 0.15 +0.2 1,162,526 + HP15_1133 0.15 +1.1 1,162,534 - HP15_1133 0.16 -1.6 1,162,633 - HP15_1133 0.30 +1.6 1,162,646 + HP15_1133 0.32 +1.3 1,162,646 + HP15_1133 0.32 +0.0 1,162,646 + HP15_1133 0.32 -0.2 1,162,654 - HP15_1133 0.33 -0.6 1,162,715 + HP15_1133 0.42 +0.3 1,162,820 + HP15_1133 0.57 +0.9 1,163,006 + HP15_1133 0.83 -0.6 1,163,006 + HP15_1133 0.83 +1.3 1,163,006 + HP15_1133 0.83 +1.6 1,163,014 - HP15_1133 0.84 -1.6 1,163,014 - HP15_1133 0.84 -0.6 1,163,014 - HP15_1133 0.84 -1.3 1,163,014 - HP15_1133 0.84 +0.4 1,163,014 - HP15_1133 0.84 +2.0 1,163,019 - HP15_1133 0.85 +0.9 1,163,085 + +0.1 1,163,104 + -0.6 1,163,152 + +0.9 1,163,192 - +0.4 1,163,236 - +0.7 1,163,236 - +0.7 1,163,236 - -0.6 1,163,304 + -0.0 1,163,307 - -1.4 1,163,356 - +1.0 1,163,364 - +0.4 1,163,366 - +1.8 1,163,539 + HP15_1134 0.44 -0.2 1,163,547 - HP15_1134 0.46 -0.6 1,163,573 + HP15_1134 0.53 +1.4 1,163,573 + HP15_1134 0.53 +1.7 1,163,583 + HP15_1134 0.55 -0.4 1,163,645 + HP15_1134 0.71 +1.1 1,163,672 - HP15_1134 0.78 -1.4 1,163,679 + HP15_1134 0.80 -0.6 1,163,692 + HP15_1134 0.83 +1.1 1,163,792 + -0.1 1,163,908 + -0.0 1,163,945 - +1.0
Or see this region's nucleotide sequence