Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS27470

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS27460 and BWI76_RS27465 are separated by 108 nucleotidesBWI76_RS27465 and BWI76_RS27470 are separated by 109 nucleotidesBWI76_RS27470 and BWI76_RS27475 are separated by 98 nucleotidesBWI76_RS27475 and BWI76_RS27480 are separated by 62 nucleotides BWI76_RS27460: BWI76_RS27460 - hypothetical protein, at 5,697,293 to 5,697,892 _RS27460 BWI76_RS27465: BWI76_RS27465 - triose-phosphate isomerase, at 5,698,001 to 5,698,768 _RS27465 BWI76_RS27470: BWI76_RS27470 - sodium:sulfate symporter family protein, at 5,698,878 to 5,700,182 _RS27470 BWI76_RS27475: BWI76_RS27475 - regulatory protein GntR family protein, at 5,700,281 to 5,701,003 _RS27475 BWI76_RS27480: BWI76_RS27480 - hypothetical protein, at 5,701,066 to 5,702,106 _RS27480 Position (kb) 5698 5699 5700 5701Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5697.921 kb on + strandat 5697.921 kb on + strandat 5697.929 kb on + strandat 5697.941 kb on + strandat 5697.943 kb on + strandat 5698.773 kb on + strandat 5698.902 kb on - strandat 5698.954 kb on + strandat 5699.039 kb on + strand, within BWI76_RS27470at 5699.065 kb on - strand, within BWI76_RS27470at 5699.121 kb on + strand, within BWI76_RS27470at 5699.127 kb on - strand, within BWI76_RS27470at 5699.407 kb on + strand, within BWI76_RS27470at 5699.425 kb on - strand, within BWI76_RS27470at 5699.425 kb on - strand, within BWI76_RS27470at 5699.566 kb on - strand, within BWI76_RS27470at 5699.568 kb on + strand, within BWI76_RS27470at 5699.581 kb on + strand, within BWI76_RS27470at 5699.617 kb on + strand, within BWI76_RS27470at 5699.853 kb on + strand, within BWI76_RS27470at 5699.853 kb on + strand, within BWI76_RS27470at 5699.866 kb on - strand, within BWI76_RS27470at 5699.938 kb on - strand, within BWI76_RS27470at 5700.093 kb on - strandat 5700.112 kb on + strandat 5700.153 kb on + strandat 5700.228 kb on + strandat 5700.279 kb on + strandat 5700.287 kb on - strandat 5700.342 kb on - strandat 5700.347 kb on + strandat 5700.424 kb on + strand, within BWI76_RS27475at 5700.424 kb on + strand, within BWI76_RS27475at 5700.424 kb on + strand, within BWI76_RS27475at 5700.424 kb on + strand, within BWI76_RS27475at 5700.424 kb on + strand, within BWI76_RS27475at 5700.432 kb on - strand, within BWI76_RS27475at 5700.432 kb on - strand, within BWI76_RS27475at 5700.432 kb on - strand, within BWI76_RS27475at 5700.432 kb on - strand, within BWI76_RS27475at 5700.432 kb on - strand, within BWI76_RS27475at 5700.432 kb on - strand, within BWI76_RS27475at 5700.432 kb on - strand, within BWI76_RS27475at 5700.432 kb on - strand, within BWI76_RS27475at 5700.435 kb on + strand, within BWI76_RS27475at 5700.435 kb on + strand, within BWI76_RS27475at 5700.479 kb on + strand, within BWI76_RS27475at 5700.514 kb on + strand, within BWI76_RS27475at 5700.514 kb on + strand, within BWI76_RS27475at 5700.514 kb on + strand, within BWI76_RS27475at 5700.514 kb on + strand, within BWI76_RS27475at 5700.522 kb on - strand, within BWI76_RS27475at 5700.522 kb on - strand, within BWI76_RS27475at 5700.527 kb on - strand, within BWI76_RS27475at 5700.637 kb on + strand, within BWI76_RS27475at 5700.645 kb on - strand, within BWI76_RS27475at 5700.780 kb on - strand, within BWI76_RS27475at 5700.827 kb on + strand, within BWI76_RS27475at 5700.835 kb on - strand, within BWI76_RS27475at 5700.837 kb on + strand, within BWI76_RS27475at 5700.877 kb on - strand, within BWI76_RS27475at 5700.976 kb on + strandat 5701.012 kb on + strandat 5701.012 kb on + strandat 5701.012 kb on + strandat 5701.020 kb on - strandat 5701.020 kb on - strandat 5701.020 kb on - strandat 5701.020 kb on - strandat 5701.045 kb on + strandat 5701.055 kb on + strandat 5701.089 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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5,697,921 + +0.2
5,697,921 + -2.2
5,697,929 + +0.3
5,697,941 + +0.2
5,697,943 + -1.0
5,698,773 + -0.0
5,698,902 - +0.9
5,698,954 + -0.5
5,699,039 + BWI76_RS27470 0.12 -0.5
5,699,065 - BWI76_RS27470 0.14 -1.5
5,699,121 + BWI76_RS27470 0.19 +0.2
5,699,127 - BWI76_RS27470 0.19 -0.0
5,699,407 + BWI76_RS27470 0.41 -0.4
5,699,425 - BWI76_RS27470 0.42 -0.1
5,699,425 - BWI76_RS27470 0.42 -0.5
5,699,566 - BWI76_RS27470 0.53 +0.1
5,699,568 + BWI76_RS27470 0.53 -0.2
5,699,581 + BWI76_RS27470 0.54 -1.2
5,699,617 + BWI76_RS27470 0.57 -0.2
5,699,853 + BWI76_RS27470 0.75 -0.7
5,699,853 + BWI76_RS27470 0.75 +0.1
5,699,866 - BWI76_RS27470 0.76 -0.1
5,699,938 - BWI76_RS27470 0.81 -0.4
5,700,093 - +0.6
5,700,112 + -1.2
5,700,153 + -0.8
5,700,228 + +0.5
5,700,279 + +0.3
5,700,287 - +0.6
5,700,342 - -1.5
5,700,347 + -0.1
5,700,424 + BWI76_RS27475 0.20 +1.7
5,700,424 + BWI76_RS27475 0.20 -0.3
5,700,424 + BWI76_RS27475 0.20 +1.6
5,700,424 + BWI76_RS27475 0.20 +1.0
5,700,424 + BWI76_RS27475 0.20 +0.5
5,700,432 - BWI76_RS27475 0.21 -0.2
5,700,432 - BWI76_RS27475 0.21 +0.4
5,700,432 - BWI76_RS27475 0.21 -2.6
5,700,432 - BWI76_RS27475 0.21 +0.0
5,700,432 - BWI76_RS27475 0.21 +0.4
5,700,432 - BWI76_RS27475 0.21 -1.0
5,700,432 - BWI76_RS27475 0.21 +0.7
5,700,432 - BWI76_RS27475 0.21 +1.0
5,700,435 + BWI76_RS27475 0.21 +1.2
5,700,435 + BWI76_RS27475 0.21 +0.4
5,700,479 + BWI76_RS27475 0.27 -1.4
5,700,514 + BWI76_RS27475 0.32 -2.0
5,700,514 + BWI76_RS27475 0.32 -0.4
5,700,514 + BWI76_RS27475 0.32 +2.1
5,700,514 + BWI76_RS27475 0.32 -1.1
5,700,522 - BWI76_RS27475 0.33 +0.2
5,700,522 - BWI76_RS27475 0.33 +0.2
5,700,527 - BWI76_RS27475 0.34 -0.2
5,700,637 + BWI76_RS27475 0.49 +0.6
5,700,645 - BWI76_RS27475 0.50 +0.3
5,700,780 - BWI76_RS27475 0.69 -1.4
5,700,827 + BWI76_RS27475 0.76 +0.5
5,700,835 - BWI76_RS27475 0.77 +0.1
5,700,837 + BWI76_RS27475 0.77 +1.7
5,700,877 - BWI76_RS27475 0.82 -0.2
5,700,976 + +1.1
5,701,012 + -0.6
5,701,012 + +3.0
5,701,012 + -1.0
5,701,020 - +0.2
5,701,020 - +0.2
5,701,020 - +1.4
5,701,020 - +0.3
5,701,045 + +1.8
5,701,055 + -0.6
5,701,089 + -1.0

Or see this region's nucleotide sequence