Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10800

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10795 and BWI76_RS10800 are separated by 427 nucleotidesBWI76_RS10800 and BWI76_RS10805 are separated by 112 nucleotidesBWI76_RS10805 and BWI76_RS10810 are separated by 69 nucleotides BWI76_RS10795: BWI76_RS10795 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data), at 2,277,440 to 2,281,402 _RS10795 BWI76_RS10800: BWI76_RS10800 - sodium:proline symporter, at 2,281,830 to 2,283,338 _RS10800 BWI76_RS10805: BWI76_RS10805 - hypothetical protein, at 2,283,451 to 2,283,885 _RS10805 BWI76_RS10810: BWI76_RS10810 - NupC family nucleoside transporter, at 2,283,955 to 2,285,139 _RS10810 Position (kb) 2281 2282 2283 2284Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2280.848 kb on + strand, within BWI76_RS10795at 2280.922 kb on + strand, within BWI76_RS10795at 2280.930 kb on - strand, within BWI76_RS10795at 2281.167 kb on + strandat 2281.183 kb on - strandat 2281.375 kb on + strandat 2281.383 kb on - strandat 2281.383 kb on - strandat 2281.456 kb on - strandat 2281.693 kb on + strandat 2281.736 kb on - strandat 2281.736 kb on - strandat 2281.765 kb on - strandat 2281.833 kb on + strandat 2281.915 kb on - strandat 2281.951 kb on + strandat 2281.951 kb on + strandat 2281.951 kb on + strandat 2281.951 kb on + strandat 2281.951 kb on + strandat 2281.959 kb on - strandat 2281.959 kb on - strandat 2281.959 kb on - strandat 2281.959 kb on - strandat 2281.959 kb on - strandat 2281.959 kb on - strandat 2281.959 kb on - strandat 2281.959 kb on - strandat 2281.959 kb on - strandat 2282.067 kb on - strand, within BWI76_RS10800at 2282.070 kb on + strand, within BWI76_RS10800at 2282.072 kb on - strand, within BWI76_RS10800at 2282.073 kb on - strand, within BWI76_RS10800at 2282.073 kb on - strand, within BWI76_RS10800at 2282.085 kb on - strand, within BWI76_RS10800at 2282.102 kb on + strand, within BWI76_RS10800at 2282.102 kb on + strand, within BWI76_RS10800at 2282.108 kb on + strand, within BWI76_RS10800at 2282.195 kb on - strand, within BWI76_RS10800at 2282.195 kb on - strand, within BWI76_RS10800at 2282.270 kb on - strand, within BWI76_RS10800at 2282.272 kb on + strand, within BWI76_RS10800at 2282.280 kb on - strand, within BWI76_RS10800at 2282.280 kb on - strand, within BWI76_RS10800at 2282.282 kb on + strand, within BWI76_RS10800at 2282.282 kb on + strand, within BWI76_RS10800at 2282.285 kb on - strand, within BWI76_RS10800at 2282.301 kb on - strand, within BWI76_RS10800at 2282.349 kb on - strand, within BWI76_RS10800at 2282.386 kb on - strand, within BWI76_RS10800at 2282.394 kb on + strand, within BWI76_RS10800at 2282.402 kb on - strand, within BWI76_RS10800at 2282.413 kb on + strand, within BWI76_RS10800at 2282.426 kb on - strand, within BWI76_RS10800at 2282.640 kb on + strand, within BWI76_RS10800at 2282.858 kb on - strand, within BWI76_RS10800at 2282.895 kb on + strand, within BWI76_RS10800at 2282.981 kb on + strand, within BWI76_RS10800at 2282.989 kb on - strand, within BWI76_RS10800at 2283.338 kb on + strandat 2283.514 kb on - strand, within BWI76_RS10805at 2283.557 kb on - strand, within BWI76_RS10805at 2283.810 kb on + strand, within BWI76_RS10805at 2283.864 kb on + strandat 2283.928 kb on - strandat 2283.997 kb on - strandat 2284.002 kb on - strandat 2284.007 kb on - strandat 2284.015 kb on - strandat 2284.065 kb on - strandat 2284.072 kb on - strandat 2284.103 kb on - strand, within BWI76_RS10810at 2284.149 kb on + strand, within BWI76_RS10810at 2284.252 kb on - strand, within BWI76_RS10810at 2284.278 kb on + strand, within BWI76_RS10810at 2284.300 kb on - strand, within BWI76_RS10810

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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2,280,848 + BWI76_RS10795 0.86 -4.7
2,280,922 + BWI76_RS10795 0.88 -1.3
2,280,930 - BWI76_RS10795 0.88 -0.4
2,281,167 + -4.6
2,281,183 - -3.5
2,281,375 + -1.1
2,281,383 - -1.3
2,281,383 - -3.5
2,281,456 - +0.1
2,281,693 + +0.3
2,281,736 - -1.1
2,281,736 - -1.4
2,281,765 - -0.6
2,281,833 + -0.5
2,281,915 - +0.3
2,281,951 + +0.2
2,281,951 + -1.2
2,281,951 + +0.6
2,281,951 + -0.5
2,281,951 + -3.0
2,281,959 - -1.4
2,281,959 - -0.3
2,281,959 - -0.6
2,281,959 - -0.5
2,281,959 - -1.4
2,281,959 - -1.6
2,281,959 - -2.8
2,281,959 - +1.9
2,281,959 - -1.1
2,282,067 - BWI76_RS10800 0.16 -2.7
2,282,070 + BWI76_RS10800 0.16 -0.5
2,282,072 - BWI76_RS10800 0.16 +0.7
2,282,073 - BWI76_RS10800 0.16 -1.3
2,282,073 - BWI76_RS10800 0.16 -1.5
2,282,085 - BWI76_RS10800 0.17 -0.3
2,282,102 + BWI76_RS10800 0.18 +0.7
2,282,102 + BWI76_RS10800 0.18 -1.7
2,282,108 + BWI76_RS10800 0.18 -0.5
2,282,195 - BWI76_RS10800 0.24 -0.4
2,282,195 - BWI76_RS10800 0.24 -0.6
2,282,270 - BWI76_RS10800 0.29 -1.6
2,282,272 + BWI76_RS10800 0.29 -0.9
2,282,280 - BWI76_RS10800 0.30 -1.1
2,282,280 - BWI76_RS10800 0.30 -0.5
2,282,282 + BWI76_RS10800 0.30 +0.3
2,282,282 + BWI76_RS10800 0.30 +0.3
2,282,285 - BWI76_RS10800 0.30 +0.3
2,282,301 - BWI76_RS10800 0.31 -0.8
2,282,349 - BWI76_RS10800 0.34 +0.2
2,282,386 - BWI76_RS10800 0.37 +0.0
2,282,394 + BWI76_RS10800 0.37 -1.3
2,282,402 - BWI76_RS10800 0.38 -0.6
2,282,413 + BWI76_RS10800 0.39 -1.1
2,282,426 - BWI76_RS10800 0.39 +0.3
2,282,640 + BWI76_RS10800 0.54 -0.7
2,282,858 - BWI76_RS10800 0.68 +0.7
2,282,895 + BWI76_RS10800 0.71 -1.2
2,282,981 + BWI76_RS10800 0.76 +1.9
2,282,989 - BWI76_RS10800 0.77 +0.3
2,283,338 + -0.1
2,283,514 - BWI76_RS10805 0.14 -0.7
2,283,557 - BWI76_RS10805 0.24 +0.2
2,283,810 + BWI76_RS10805 0.83 -0.2
2,283,864 + +0.3
2,283,928 - +0.4
2,283,997 - +0.4
2,284,002 - -0.1
2,284,007 - -0.4
2,284,015 - -0.3
2,284,065 - -0.1
2,284,072 - +0.4
2,284,103 - BWI76_RS10810 0.12 -0.6
2,284,149 + BWI76_RS10810 0.16 +0.3
2,284,252 - BWI76_RS10810 0.25 -0.1
2,284,278 + BWI76_RS10810 0.27 +0.4
2,284,300 - BWI76_RS10810 0.29 +0.4

Or see this region's nucleotide sequence