Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10795 and BWI76_RS10800 are separated by 427 nucleotides BWI76_RS10800 and BWI76_RS10805 are separated by 112 nucleotides BWI76_RS10805 and BWI76_RS10810 are separated by 69 nucleotides
BWI76_RS10795: BWI76_RS10795 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) , at 2,277,440 to 2,281,402
_RS10795
BWI76_RS10800: BWI76_RS10800 - sodium:proline symporter, at 2,281,830 to 2,283,338
_RS10800
BWI76_RS10805: BWI76_RS10805 - hypothetical protein, at 2,283,451 to 2,283,885
_RS10805
BWI76_RS10810: BWI76_RS10810 - NupC family nucleoside transporter, at 2,283,955 to 2,285,139
_RS10810
Position (kb)
2281
2282
2283
2284 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2280.848 kb on + strand, within BWI76_RS10795 at 2280.922 kb on + strand, within BWI76_RS10795 at 2280.930 kb on - strand, within BWI76_RS10795 at 2281.167 kb on + strand at 2281.183 kb on - strand at 2281.375 kb on + strand at 2281.383 kb on - strand at 2281.383 kb on - strand at 2281.456 kb on - strand at 2281.693 kb on + strand at 2281.736 kb on - strand at 2281.736 kb on - strand at 2281.765 kb on - strand at 2281.833 kb on + strand at 2281.915 kb on - strand at 2281.951 kb on + strand at 2281.951 kb on + strand at 2281.951 kb on + strand at 2281.951 kb on + strand at 2281.951 kb on + strand at 2281.959 kb on - strand at 2281.959 kb on - strand at 2281.959 kb on - strand at 2281.959 kb on - strand at 2281.959 kb on - strand at 2281.959 kb on - strand at 2281.959 kb on - strand at 2281.959 kb on - strand at 2281.959 kb on - strand at 2282.067 kb on - strand, within BWI76_RS10800 at 2282.070 kb on + strand, within BWI76_RS10800 at 2282.072 kb on - strand, within BWI76_RS10800 at 2282.073 kb on - strand, within BWI76_RS10800 at 2282.073 kb on - strand, within BWI76_RS10800 at 2282.085 kb on - strand, within BWI76_RS10800 at 2282.102 kb on + strand, within BWI76_RS10800 at 2282.102 kb on + strand, within BWI76_RS10800 at 2282.108 kb on + strand, within BWI76_RS10800 at 2282.195 kb on - strand, within BWI76_RS10800 at 2282.195 kb on - strand, within BWI76_RS10800 at 2282.270 kb on - strand, within BWI76_RS10800 at 2282.272 kb on + strand, within BWI76_RS10800 at 2282.280 kb on - strand, within BWI76_RS10800 at 2282.280 kb on - strand, within BWI76_RS10800 at 2282.282 kb on + strand, within BWI76_RS10800 at 2282.282 kb on + strand, within BWI76_RS10800 at 2282.285 kb on - strand, within BWI76_RS10800 at 2282.301 kb on - strand, within BWI76_RS10800 at 2282.349 kb on - strand, within BWI76_RS10800 at 2282.386 kb on - strand, within BWI76_RS10800 at 2282.394 kb on + strand, within BWI76_RS10800 at 2282.402 kb on - strand, within BWI76_RS10800 at 2282.413 kb on + strand, within BWI76_RS10800 at 2282.426 kb on - strand, within BWI76_RS10800 at 2282.640 kb on + strand, within BWI76_RS10800 at 2282.858 kb on - strand, within BWI76_RS10800 at 2282.895 kb on + strand, within BWI76_RS10800 at 2282.981 kb on + strand, within BWI76_RS10800 at 2282.989 kb on - strand, within BWI76_RS10800 at 2283.338 kb on + strand at 2283.514 kb on - strand, within BWI76_RS10805 at 2283.557 kb on - strand, within BWI76_RS10805 at 2283.810 kb on + strand, within BWI76_RS10805 at 2283.864 kb on + strand at 2283.928 kb on - strand at 2283.997 kb on - strand at 2284.002 kb on - strand at 2284.007 kb on - strand at 2284.015 kb on - strand at 2284.065 kb on - strand at 2284.072 kb on - strand at 2284.103 kb on - strand, within BWI76_RS10810 at 2284.149 kb on + strand, within BWI76_RS10810 at 2284.252 kb on - strand, within BWI76_RS10810 at 2284.278 kb on + strand, within BWI76_RS10810 at 2284.300 kb on - strand, within BWI76_RS10810
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 2,280,848 + BWI76_RS10795 0.86 -4.7 2,280,922 + BWI76_RS10795 0.88 -1.3 2,280,930 - BWI76_RS10795 0.88 -0.4 2,281,167 + -4.6 2,281,183 - -3.5 2,281,375 + -1.1 2,281,383 - -1.3 2,281,383 - -3.5 2,281,456 - +0.1 2,281,693 + +0.3 2,281,736 - -1.1 2,281,736 - -1.4 2,281,765 - -0.6 2,281,833 + -0.5 2,281,915 - +0.3 2,281,951 + +0.2 2,281,951 + -1.2 2,281,951 + +0.6 2,281,951 + -0.5 2,281,951 + -3.0 2,281,959 - -1.4 2,281,959 - -0.3 2,281,959 - -0.6 2,281,959 - -0.5 2,281,959 - -1.4 2,281,959 - -1.6 2,281,959 - -2.8 2,281,959 - +1.9 2,281,959 - -1.1 2,282,067 - BWI76_RS10800 0.16 -2.7 2,282,070 + BWI76_RS10800 0.16 -0.5 2,282,072 - BWI76_RS10800 0.16 +0.7 2,282,073 - BWI76_RS10800 0.16 -1.3 2,282,073 - BWI76_RS10800 0.16 -1.5 2,282,085 - BWI76_RS10800 0.17 -0.3 2,282,102 + BWI76_RS10800 0.18 +0.7 2,282,102 + BWI76_RS10800 0.18 -1.7 2,282,108 + BWI76_RS10800 0.18 -0.5 2,282,195 - BWI76_RS10800 0.24 -0.4 2,282,195 - BWI76_RS10800 0.24 -0.6 2,282,270 - BWI76_RS10800 0.29 -1.6 2,282,272 + BWI76_RS10800 0.29 -0.9 2,282,280 - BWI76_RS10800 0.30 -1.1 2,282,280 - BWI76_RS10800 0.30 -0.5 2,282,282 + BWI76_RS10800 0.30 +0.3 2,282,282 + BWI76_RS10800 0.30 +0.3 2,282,285 - BWI76_RS10800 0.30 +0.3 2,282,301 - BWI76_RS10800 0.31 -0.8 2,282,349 - BWI76_RS10800 0.34 +0.2 2,282,386 - BWI76_RS10800 0.37 +0.0 2,282,394 + BWI76_RS10800 0.37 -1.3 2,282,402 - BWI76_RS10800 0.38 -0.6 2,282,413 + BWI76_RS10800 0.39 -1.1 2,282,426 - BWI76_RS10800 0.39 +0.3 2,282,640 + BWI76_RS10800 0.54 -0.7 2,282,858 - BWI76_RS10800 0.68 +0.7 2,282,895 + BWI76_RS10800 0.71 -1.2 2,282,981 + BWI76_RS10800 0.76 +1.9 2,282,989 - BWI76_RS10800 0.77 +0.3 2,283,338 + -0.1 2,283,514 - BWI76_RS10805 0.14 -0.7 2,283,557 - BWI76_RS10805 0.24 +0.2 2,283,810 + BWI76_RS10805 0.83 -0.2 2,283,864 + +0.3 2,283,928 - +0.4 2,283,997 - +0.4 2,284,002 - -0.1 2,284,007 - -0.4 2,284,015 - -0.3 2,284,065 - -0.1 2,284,072 - +0.4 2,284,103 - BWI76_RS10810 0.12 -0.6 2,284,149 + BWI76_RS10810 0.16 +0.3 2,284,252 - BWI76_RS10810 0.25 -0.1 2,284,278 + BWI76_RS10810 0.27 +0.4 2,284,300 - BWI76_RS10810 0.29 +0.4
Or see this region's nucleotide sequence