Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3059

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3058 and DvMF_3059 are separated by 542 nucleotidesDvMF_3059 and DvMF_3060 are separated by 233 nucleotides DvMF_3058: DvMF_3058 - putative nucleotide-binding protein (RefSeq), at 3,860,590 to 3,861,081 _3058 DvMF_3059: DvMF_3059 - hypothetical protein (RefSeq), at 3,861,624 to 3,862,022 _3059 DvMF_3060: DvMF_3060 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,862,256 to 3,864,235 _3060 Position (kb) 3861 3862 3863Strain fitness (log2 ratio) -1 0 1at 3860.629 kb on + strandat 3860.641 kb on + strand, within DvMF_3058at 3861.041 kb on + strandat 3861.226 kb on - strandat 3861.400 kb on - strandat 3861.468 kb on + strandat 3861.576 kb on + strandat 3862.027 kb on - strandat 3862.289 kb on - strandat 3862.298 kb on + strandat 3862.716 kb on + strand, within DvMF_3060

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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3,860,629 + +0.0
3,860,641 + DvMF_3058 0.10 -0.3
3,861,041 + -1.3
3,861,226 - -0.2
3,861,400 - +0.4
3,861,468 + -0.6
3,861,576 + -0.3
3,862,027 - -1.2
3,862,289 - -0.6
3,862,298 + -0.1
3,862,716 + DvMF_3060 0.23 +0.2

Or see this region's nucleotide sequence