Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0797

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0796 and DvMF_0797 are separated by 195 nucleotidesDvMF_0797 and DvMF_0798 are separated by 325 nucleotides DvMF_0796: DvMF_0796 - Calcium-binding EF-hand-containing protein (RefSeq), at 960,431 to 961,423 _0796 DvMF_0797: DvMF_0797 - thiamine-phosphate pyrophosphorylase (RefSeq), at 961,619 to 962,272 _0797 DvMF_0798: DvMF_0798 - thiamine biosynthesis protein ThiF (RefSeq), at 962,598 to 963,218 _0798 Position (kb) 961 962 963Strain fitness (log2 ratio) -2 -1 0 1at 960.749 kb on + strand, within DvMF_0796at 960.986 kb on - strand, within DvMF_0796at 960.996 kb on - strand, within DvMF_0796at 961.230 kb on - strand, within DvMF_0796at 961.373 kb on - strandat 961.464 kb on - strandat 961.490 kb on + strandat 961.915 kb on - strand, within DvMF_0797at 962.031 kb on - strand, within DvMF_0797at 962.064 kb on - strand, within DvMF_0797at 962.183 kb on + strand, within DvMF_0797at 962.417 kb on - strandat 962.504 kb on + strandat 962.583 kb on - strandat 962.859 kb on + strand, within DvMF_0798at 963.068 kb on + strand, within DvMF_0798at 963.186 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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960,749 + DvMF_0796 0.32 +0.3
960,986 - DvMF_0796 0.56 -2.1
960,996 - DvMF_0796 0.57 -0.1
961,230 - DvMF_0796 0.80 +0.1
961,373 - +0.2
961,464 - +0.2
961,490 + +0.9
961,915 - DvMF_0797 0.45 +0.6
962,031 - DvMF_0797 0.63 +0.5
962,064 - DvMF_0797 0.68 +1.6
962,183 + DvMF_0797 0.86 +0.4
962,417 - +1.3
962,504 + +0.4
962,583 - +0.2
962,859 + DvMF_0798 0.42 +0.6
963,068 + DvMF_0798 0.76 +0.8
963,186 - -0.5

Or see this region's nucleotide sequence