Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3043

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3041 and Dshi_3042 are separated by 3 nucleotidesDshi_3042 and Dshi_3043 overlap by 1 nucleotidesDshi_3043 and Dshi_3044 are separated by 122 nucleotides Dshi_3041: Dshi_3041 - ribosome-binding factor A (RefSeq), at 3,210,091 to 3,210,498 _3041 Dshi_3042: Dshi_3042 - tRNA pseudouridine synthase B (RefSeq), at 3,210,502 to 3,211,416 _3042 Dshi_3043: Dshi_3043 - protein of unknown function DUF1294 (RefSeq), at 3,211,416 to 3,211,694 _3043 Dshi_3044: Dshi_3044 - Feruloyl esterase (RefSeq), at 3,211,817 to 3,213,247 _3044 Position (kb) 3211 3212Strain fitness (log2 ratio) -2 -1 0 1at 3210.492 kb on + strandat 3210.499 kb on + strandat 3210.537 kb on - strandat 3210.580 kb on + strandat 3210.599 kb on - strand, within Dshi_3042at 3210.766 kb on - strand, within Dshi_3042at 3210.873 kb on + strand, within Dshi_3042at 3211.017 kb on + strand, within Dshi_3042at 3211.112 kb on + strand, within Dshi_3042at 3211.182 kb on + strand, within Dshi_3042at 3211.343 kb on - strandat 3211.385 kb on - strandat 3211.672 kb on - strandat 3211.762 kb on - strandat 3211.766 kb on - strandat 3211.800 kb on + strandat 3211.839 kb on + strandat 3212.064 kb on - strand, within Dshi_3044at 3212.122 kb on + strand, within Dshi_3044at 3212.125 kb on - strand, within Dshi_3044at 3212.295 kb on - strand, within Dshi_3044at 3212.446 kb on - strand, within Dshi_3044at 3212.471 kb on - strand, within Dshi_3044at 3212.653 kb on + strand, within Dshi_3044at 3212.677 kb on - strand, within Dshi_3044

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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3,210,492 + +0.8
3,210,499 + +0.3
3,210,537 - +1.1
3,210,580 + +0.5
3,210,599 - Dshi_3042 0.11 +0.4
3,210,766 - Dshi_3042 0.29 -0.3
3,210,873 + Dshi_3042 0.41 +1.3
3,211,017 + Dshi_3042 0.56 +1.2
3,211,112 + Dshi_3042 0.67 -0.0
3,211,182 + Dshi_3042 0.74 -0.2
3,211,343 - +0.1
3,211,385 - -0.9
3,211,672 - -0.0
3,211,762 - -1.1
3,211,766 - -0.1
3,211,800 + +0.8
3,211,839 + +0.2
3,212,064 - Dshi_3044 0.17 +0.5
3,212,122 + Dshi_3044 0.21 -0.1
3,212,125 - Dshi_3044 0.22 -2.0
3,212,295 - Dshi_3044 0.33 -0.2
3,212,446 - Dshi_3044 0.44 -0.4
3,212,471 - Dshi_3044 0.46 +0.5
3,212,653 + Dshi_3044 0.58 -0.1
3,212,677 - Dshi_3044 0.60 +0.2

Or see this region's nucleotide sequence