Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2719

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2716 and Dshi_2717 are separated by 133 nucleotidesDshi_2717 and Dshi_2718 are separated by 13 nucleotidesDshi_2718 and Dshi_2719 are separated by 55 nucleotidesDshi_2719 and Dshi_2720 are separated by 57 nucleotides Dshi_2716: Dshi_2716 - hypothetical protein (RefSeq), at 2,878,109 to 2,878,555 _2716 Dshi_2717: Dshi_2717 - hypothetical protein (RefSeq), at 2,878,689 to 2,879,210 _2717 Dshi_2718: Dshi_2718 - transcriptional regulator, XRE family (RefSeq), at 2,879,224 to 2,879,460 _2718 Dshi_2719: Dshi_2719 - Cobaltochelatase (RefSeq), at 2,879,516 to 2,881,390 _2719 Dshi_2720: Dshi_2720 - Endonuclease/exonuclease/phosphatase (RefSeq), at 2,881,448 to 2,882,575 _2720 Position (kb) 2879 2880 2881 2882Strain fitness (log2 ratio) -1 0 1 2at 2878.559 kb on + strandat 2878.687 kb on - strandat 2878.721 kb on + strandat 2878.949 kb on - strand, within Dshi_2717at 2879.049 kb on - strand, within Dshi_2717at 2879.193 kb on + strandat 2879.328 kb on + strand, within Dshi_2718at 2879.328 kb on + strand, within Dshi_2718at 2879.328 kb on + strand, within Dshi_2718at 2879.328 kb on + strand, within Dshi_2718at 2879.336 kb on - strand, within Dshi_2718at 2879.414 kb on + strand, within Dshi_2718at 2879.484 kb on - strandat 2879.484 kb on - strandat 2879.507 kb on - strandat 2879.527 kb on + strandat 2881.333 kb on + strandat 2881.352 kb on + strandat 2881.393 kb on - strandat 2881.566 kb on - strand, within Dshi_2720at 2881.709 kb on - strand, within Dshi_2720at 2881.720 kb on - strand, within Dshi_2720at 2881.932 kb on + strand, within Dshi_2720at 2882.044 kb on - strand, within Dshi_2720at 2882.160 kb on + strand, within Dshi_2720at 2882.169 kb on - strand, within Dshi_2720at 2882.341 kb on + strand, within Dshi_2720at 2882.360 kb on + strand, within Dshi_2720

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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2,878,559 + -0.7
2,878,687 - -0.3
2,878,721 + -0.1
2,878,949 - Dshi_2717 0.50 -0.2
2,879,049 - Dshi_2717 0.69 -0.2
2,879,193 + -0.5
2,879,328 + Dshi_2718 0.44 +0.3
2,879,328 + Dshi_2718 0.44 -0.8
2,879,328 + Dshi_2718 0.44 -1.0
2,879,328 + Dshi_2718 0.44 -0.1
2,879,336 - Dshi_2718 0.47 -0.2
2,879,414 + Dshi_2718 0.80 +0.2
2,879,484 - +0.4
2,879,484 - +0.5
2,879,507 - +1.4
2,879,527 + +0.1
2,881,333 + +1.6
2,881,352 + +0.2
2,881,393 - -0.1
2,881,566 - Dshi_2720 0.10 +0.9
2,881,709 - Dshi_2720 0.23 +2.1
2,881,720 - Dshi_2720 0.24 -0.4
2,881,932 + Dshi_2720 0.43 -0.4
2,882,044 - Dshi_2720 0.53 +0.1
2,882,160 + Dshi_2720 0.63 -0.1
2,882,169 - Dshi_2720 0.64 +0.8
2,882,341 + Dshi_2720 0.79 -0.0
2,882,360 + Dshi_2720 0.81 -1.6

Or see this region's nucleotide sequence