Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2597

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2595 and Dshi_2596 overlap by 4 nucleotidesDshi_2596 and Dshi_2597 overlap by 7 nucleotidesDshi_2597 and Dshi_2598 overlap by 4 nucleotidesDshi_2598 and Dshi_2599 overlap by 17 nucleotides Dshi_2595: Dshi_2595 - extracellular solute-binding protein family 5 (RefSeq), at 2,759,653 to 2,761,176 _2595 Dshi_2596: Dshi_2596 - ABC transporter related (RefSeq), at 2,761,173 to 2,761,856 _2596 Dshi_2597: Dshi_2597 - ABC transporter related (RefSeq), at 2,761,850 to 2,762,575 _2597 Dshi_2598: Dshi_2598 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,762,572 to 2,763,510 _2598 Dshi_2599: Dshi_2599 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,763,494 to 2,764,297 _2599 Position (kb) 2761 2762 2763Strain fitness (log2 ratio) -2 -1 0 1at 2760.897 kb on + strand, within Dshi_2595at 2760.905 kb on + strand, within Dshi_2595at 2760.950 kb on - strand, within Dshi_2595at 2760.955 kb on - strand, within Dshi_2595at 2760.992 kb on + strand, within Dshi_2595at 2761.000 kb on - strand, within Dshi_2595at 2761.000 kb on - strand, within Dshi_2595at 2761.071 kb on - strandat 2761.072 kb on - strandat 2761.098 kb on - strandat 2761.108 kb on - strandat 2761.108 kb on - strandat 2761.161 kb on + strandat 2761.194 kb on - strandat 2761.244 kb on + strand, within Dshi_2596at 2761.374 kb on - strand, within Dshi_2596at 2761.378 kb on + strand, within Dshi_2596at 2761.435 kb on - strand, within Dshi_2596at 2761.436 kb on - strand, within Dshi_2596at 2761.443 kb on - strand, within Dshi_2596at 2761.469 kb on + strand, within Dshi_2596at 2761.469 kb on + strand, within Dshi_2596at 2761.477 kb on - strand, within Dshi_2596at 2761.525 kb on + strand, within Dshi_2596at 2761.544 kb on - strand, within Dshi_2596at 2761.560 kb on + strand, within Dshi_2596at 2761.573 kb on + strand, within Dshi_2596at 2761.573 kb on + strand, within Dshi_2596at 2761.573 kb on + strand, within Dshi_2596at 2761.573 kb on + strand, within Dshi_2596at 2761.573 kb on + strand, within Dshi_2596at 2761.581 kb on - strand, within Dshi_2596at 2761.618 kb on - strand, within Dshi_2596at 2761.772 kb on + strand, within Dshi_2596at 2761.817 kb on + strandat 2761.898 kb on + strandat 2761.906 kb on - strandat 2761.967 kb on - strand, within Dshi_2597at 2762.126 kb on - strand, within Dshi_2597at 2762.129 kb on + strand, within Dshi_2597at 2762.138 kb on + strand, within Dshi_2597at 2762.138 kb on + strand, within Dshi_2597at 2762.139 kb on - strand, within Dshi_2597at 2762.189 kb on + strand, within Dshi_2597at 2762.207 kb on + strand, within Dshi_2597at 2762.228 kb on - strand, within Dshi_2597at 2762.235 kb on + strand, within Dshi_2597at 2762.238 kb on - strand, within Dshi_2597at 2762.249 kb on - strand, within Dshi_2597at 2762.308 kb on + strand, within Dshi_2597at 2762.322 kb on - strand, within Dshi_2597at 2762.411 kb on - strand, within Dshi_2597at 2762.411 kb on - strand, within Dshi_2597at 2762.430 kb on + strand, within Dshi_2597at 2762.473 kb on + strand, within Dshi_2597at 2762.473 kb on + strand, within Dshi_2597at 2762.473 kb on + strand, within Dshi_2597at 2762.481 kb on - strand, within Dshi_2597at 2762.512 kb on - strandat 2762.523 kb on - strandat 2762.561 kb on - strandat 2762.614 kb on - strandat 2762.655 kb on - strandat 2762.655 kb on - strandat 2762.668 kb on - strand, within Dshi_2598at 2762.701 kb on + strand, within Dshi_2598at 2762.701 kb on + strand, within Dshi_2598at 2762.715 kb on - strand, within Dshi_2598at 2762.758 kb on - strand, within Dshi_2598at 2762.763 kb on + strand, within Dshi_2598at 2762.771 kb on - strand, within Dshi_2598at 2762.775 kb on + strand, within Dshi_2598at 2762.781 kb on + strand, within Dshi_2598at 2762.783 kb on - strand, within Dshi_2598at 2762.786 kb on + strand, within Dshi_2598at 2762.786 kb on + strand, within Dshi_2598at 2762.796 kb on + strand, within Dshi_2598at 2762.834 kb on + strand, within Dshi_2598at 2762.841 kb on + strand, within Dshi_2598at 2762.841 kb on + strand, within Dshi_2598at 2762.841 kb on + strand, within Dshi_2598at 2762.841 kb on + strand, within Dshi_2598at 2762.849 kb on - strand, within Dshi_2598at 2762.849 kb on - strand, within Dshi_2598at 2762.849 kb on - strand, within Dshi_2598at 2762.890 kb on - strand, within Dshi_2598at 2762.918 kb on + strand, within Dshi_2598at 2762.929 kb on - strand, within Dshi_2598at 2762.946 kb on + strand, within Dshi_2598at 2762.986 kb on - strand, within Dshi_2598at 2763.002 kb on - strand, within Dshi_2598at 2763.050 kb on - strand, within Dshi_2598at 2763.069 kb on - strand, within Dshi_2598at 2763.091 kb on + strand, within Dshi_2598at 2763.099 kb on - strand, within Dshi_2598at 2763.113 kb on + strand, within Dshi_2598at 2763.125 kb on + strand, within Dshi_2598at 2763.126 kb on - strand, within Dshi_2598at 2763.159 kb on - strand, within Dshi_2598at 2763.171 kb on + strand, within Dshi_2598at 2763.183 kb on + strand, within Dshi_2598at 2763.202 kb on + strand, within Dshi_2598at 2763.265 kb on + strand, within Dshi_2598at 2763.421 kb on - strandat 2763.443 kb on + strandat 2763.443 kb on + strandat 2763.444 kb on + strandat 2763.476 kb on + strandat 2763.476 kb on + strandat 2763.482 kb on + strandat 2763.484 kb on - strandat 2763.488 kb on + strandat 2763.490 kb on - strandat 2763.497 kb on + strandat 2763.500 kb on - strandat 2763.518 kb on + strandat 2763.541 kb on + strandat 2763.558 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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2,760,897 + Dshi_2595 0.82 +0.6
2,760,905 + Dshi_2595 0.82 +0.8
2,760,950 - Dshi_2595 0.85 -0.8
2,760,955 - Dshi_2595 0.85 -0.3
2,760,992 + Dshi_2595 0.88 -0.1
2,761,000 - Dshi_2595 0.88 -0.3
2,761,000 - Dshi_2595 0.88 +0.5
2,761,071 - -0.5
2,761,072 - +0.4
2,761,098 - -0.5
2,761,108 - -0.1
2,761,108 - +0.1
2,761,161 + -0.4
2,761,194 - -0.3
2,761,244 + Dshi_2596 0.10 +0.1
2,761,374 - Dshi_2596 0.29 -0.5
2,761,378 + Dshi_2596 0.30 -0.0
2,761,435 - Dshi_2596 0.38 -0.3
2,761,436 - Dshi_2596 0.38 +0.2
2,761,443 - Dshi_2596 0.39 -1.2
2,761,469 + Dshi_2596 0.43 -0.2
2,761,469 + Dshi_2596 0.43 +0.9
2,761,477 - Dshi_2596 0.44 -0.2
2,761,525 + Dshi_2596 0.51 -0.6
2,761,544 - Dshi_2596 0.54 +0.2
2,761,560 + Dshi_2596 0.57 +0.3
2,761,573 + Dshi_2596 0.58 +0.2
2,761,573 + Dshi_2596 0.58 -0.6
2,761,573 + Dshi_2596 0.58 +0.8
2,761,573 + Dshi_2596 0.58 -0.6
2,761,573 + Dshi_2596 0.58 +0.9
2,761,581 - Dshi_2596 0.60 +0.1
2,761,618 - Dshi_2596 0.65 +0.5
2,761,772 + Dshi_2596 0.88 -0.0
2,761,817 + +0.1
2,761,898 + -0.1
2,761,906 - -0.1
2,761,967 - Dshi_2597 0.16 +0.3
2,762,126 - Dshi_2597 0.38 +0.6
2,762,129 + Dshi_2597 0.38 +0.8
2,762,138 + Dshi_2597 0.40 -0.3
2,762,138 + Dshi_2597 0.40 +0.7
2,762,139 - Dshi_2597 0.40 -1.5
2,762,189 + Dshi_2597 0.47 -0.6
2,762,207 + Dshi_2597 0.49 +1.3
2,762,228 - Dshi_2597 0.52 -0.1
2,762,235 + Dshi_2597 0.53 -0.5
2,762,238 - Dshi_2597 0.53 +0.8
2,762,249 - Dshi_2597 0.55 +0.1
2,762,308 + Dshi_2597 0.63 -1.9
2,762,322 - Dshi_2597 0.65 -0.6
2,762,411 - Dshi_2597 0.77 -0.4
2,762,411 - Dshi_2597 0.77 -0.2
2,762,430 + Dshi_2597 0.80 -0.3
2,762,473 + Dshi_2597 0.86 -0.4
2,762,473 + Dshi_2597 0.86 -0.1
2,762,473 + Dshi_2597 0.86 -0.0
2,762,481 - Dshi_2597 0.87 -1.3
2,762,512 - -0.2
2,762,523 - +0.3
2,762,561 - +0.5
2,762,614 - -0.2
2,762,655 - +1.0
2,762,655 - +0.3
2,762,668 - Dshi_2598 0.10 -1.8
2,762,701 + Dshi_2598 0.14 -0.0
2,762,701 + Dshi_2598 0.14 +0.4
2,762,715 - Dshi_2598 0.15 -0.2
2,762,758 - Dshi_2598 0.20 +0.3
2,762,763 + Dshi_2598 0.20 -0.9
2,762,771 - Dshi_2598 0.21 +0.4
2,762,775 + Dshi_2598 0.22 -0.4
2,762,781 + Dshi_2598 0.22 +1.4
2,762,783 - Dshi_2598 0.22 +0.2
2,762,786 + Dshi_2598 0.23 -0.5
2,762,786 + Dshi_2598 0.23 -0.5
2,762,796 + Dshi_2598 0.24 -1.1
2,762,834 + Dshi_2598 0.28 +0.2
2,762,841 + Dshi_2598 0.29 +0.1
2,762,841 + Dshi_2598 0.29 -0.2
2,762,841 + Dshi_2598 0.29 -1.4
2,762,841 + Dshi_2598 0.29 -0.5
2,762,849 - Dshi_2598 0.29 -0.8
2,762,849 - Dshi_2598 0.29 -0.1
2,762,849 - Dshi_2598 0.29 -0.8
2,762,890 - Dshi_2598 0.34 +0.3
2,762,918 + Dshi_2598 0.37 +1.0
2,762,929 - Dshi_2598 0.38 +0.8
2,762,946 + Dshi_2598 0.40 +0.8
2,762,986 - Dshi_2598 0.44 -0.3
2,763,002 - Dshi_2598 0.46 -0.6
2,763,050 - Dshi_2598 0.51 +0.1
2,763,069 - Dshi_2598 0.53 -0.7
2,763,091 + Dshi_2598 0.55 +0.1
2,763,099 - Dshi_2598 0.56 -0.2
2,763,113 + Dshi_2598 0.58 -0.7
2,763,125 + Dshi_2598 0.59 +0.4
2,763,126 - Dshi_2598 0.59 +0.2
2,763,159 - Dshi_2598 0.63 -0.2
2,763,171 + Dshi_2598 0.64 -0.5
2,763,183 + Dshi_2598 0.65 -0.3
2,763,202 + Dshi_2598 0.67 +0.2
2,763,265 + Dshi_2598 0.74 +0.0
2,763,421 - -1.0
2,763,443 + -0.4
2,763,443 + -0.7
2,763,444 + -1.1
2,763,476 + +0.4
2,763,476 + -0.2
2,763,482 + -0.4
2,763,484 - +0.1
2,763,488 + +0.2
2,763,490 - +1.4
2,763,497 + +0.5
2,763,500 - +0.3
2,763,518 + -0.7
2,763,541 + +0.2
2,763,558 - +0.8

Or see this region's nucleotide sequence